pivot_transcript {tidybulk} | R Documentation

## Extract transcript-wise information

### Description

pivot_transcript() takes as input a 'tbl' formatted as | <SAMPLE> | <ENSEMBL_ID> | <COUNT> | <...> | and returns a 'tbl' with only sample-related columns

### Usage

    pivot_transcript(.data, .transcript = NULL)

    ## S4 method for signature 'spec_tbl_df'
    pivot_transcript(.data, .transcript = NULL)

    ## S4 method for signature 'tbl_df'
    pivot_transcript(.data, .transcript = NULL)

    ## S4 method for signature 'tidybulk'
    pivot_transcript(.data, .transcript = NULL)

    ## S4 method for signature 'SummarizedExperiment'
    pivot_transcript(.data, .transcript = NULL)

    ## S4 method for signature 'RangedSummarizedExperiment'
    pivot_transcript(.data, .transcript = NULL)

### Arguments

`.data` | A 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |
`.transcript` | The name of the transcript column

### Details

'r lifecycle::badge("maturing")'

This functon extracts only transcript-related information for downstream analysis (e.g., visualisation). It is disruptive in the sense that it cannot be passed anymore to tidybulk function.

### Value

A 'tbl' object

A 'tbl' object

A 'tbl' object

A 'tbl' object

A 'tbl' object

A 'tbl' object

### Examples

    	pivot_transcript(tidybulk::se_mini 	)

[Package tidybulk version 1.4.0 Index]