Type: Package
Package: tidybulk
Title: Brings transcriptomics to the tidyverse
Version: 1.4.0
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
                  role = c("aut", "cre")),
            person("Maria", "Doyle", email = "Maria.Doyle@petermac.org",
            role = c("ctb"))
                  )
Description: This is a collection of utility functions that allow
    to perform exploration of and calculations to RNA sequencing data, in
    a modular, pipe-friendly and tidy fashion.
License: GPL-3
Depends: R (>= 4.1.0)
Imports: tibble, readr, dplyr, magrittr, tidyr, stringr, rlang, purrr,
        preprocessCore, stats, parallel, utils, lifecycle, scales,
        SummarizedExperiment, methods
Suggests: BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
        Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva,
        GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne,
        S4Vectors, ggplot2, widyr, clusterProfiler, msigdbr, DESeq2,
        broom, survival, boot, betareg, tidyHeatmap, pasilla, ggrepel,
        devtools, functional, survminer, tidySummarizedExperiment,
        markdown
VignetteBuilder: knitr
RdMacros: lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        GeneExpression, Normalization, Clustering, QualityControl,
        Sequencing, Transcription, Transcriptomics
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
LazyDataCompression: xz
git_url: https://git.bioconductor.org/packages/tidybulk
git_branch: RELEASE_3_13
git_last_commit: 945a727
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-20 02:43:51 UTC; biocbuild
Author: Stefano Mangiola [aut, cre],
  Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Built: R 4.1.0; ; 2021-05-20 10:20:44 UTC; windows
