get_scaled_counts_bulk {tidybulk} | R Documentation

## Get a tibble with scaled counts using TMM

### Description

Get a tibble with scaled counts using TMM

### Usage

    get_scaled_counts_bulk(
      .data,
      .sample = NULL,
      .transcript = NULL,
      .abundance = NULL,
      method = "TMM",
      reference_sample = NULL
    )

### Arguments

`.data` | A tibble
`.sample` | The name of the sample column
`.transcript` | The name of the transcript/gene column
`.abundance` | The name of the transcript/gene abundance column
`method` | A character string. The scaling method passed to the backend function (i.e., edgeR::calcNormFactors; "TMM","TMMwsp","RLE","upperquartile")
`reference_sample` | A character string. The name of the reference sample. If NULL the sample with highest total read count will be selected as reference.

### Value

A tibble including additional columns

[Package tidybulk version 1.4.0 Index]