ensembl_to_symbol {tidybulk} | R Documentation

## Add transcript symbol column from ensembl id for human and mouse data

### Description

ensembl_to_symbol() takes as input a 'tbl' formatted as | <SAMPLE> | <ENSEMBL_ID> | <COUNT> | <...> | and returns a 'tbl' with the additional transcript symbol column

### Usage

    ensembl_to_symbol(.data, .ensembl, action = "add")

    ## S4 method for signature 'spec_tbl_df'
    ensembl_to_symbol(.data, .ensembl, action = "add")

    ## S4 method for signature 'tbl_df'
    ensembl_to_symbol(.data, .ensembl, action = "add")

    ## S4 method for signature 'tidybulk'
    ensembl_to_symbol(.data, .ensembl, action = "add")

### Arguments

`.data` | A 'tbl' formatted as | <SAMPLE> | <ENSEMBL_ID> | <COUNT> | <...> |
`.ensembl` | A character string. The column that is represents ensembl gene id
`action` | A character string. Whether to join the new information to the input tbl (add), or just get the non-redundant tbl with the new information (get).

### Details

This is useful since different resources use ensembl IDs while others use gene symbol IDs. At the moment this work for human (genes and transcripts) and mouse (genes) data.

### Value

A 'tbl' object including additional columns for transcript symbol

A 'tbl' object including additional columns for transcript symbol

A 'tbl' object including additional columns for transcript symbol

A 'tbl' object including additional columns for transcript symbol

### Examples

    library(dplyr)

    tidybulk::counts_SE %>% tidybulk() %>% as_tibble() %>% ensembl_to_symbol(feature)

[Package tidybulk version 1.4.0 Index]