tidybulk {tidybulk} | R Documentation

## Creates a 'tt' object from a 'tbl' or 'SummarizedExperiment' object

### Description

tidybulk() creates a 'tt' object from a 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |

### Usage

    tidybulk(.data, .sample, .transcript, .abundance, .abundance_scaled = NULL)

    ## S4 method for signature 'spec_tbl_df'
    tidybulk(.data, .sample, .transcript, .abundance, .abundance_scaled = NULL)

    ## S4 method for signature 'tbl_df'
    tidybulk(.data, .sample, .transcript, .abundance, .abundance_scaled = NULL)

    ## S4 method for signature 'SummarizedExperiment'
    tidybulk(.data, .sample, .transcript, .abundance, .abundance_scaled = NULL)

    ## S4 method for signature 'RangedSummarizedExperiment'
    tidybulk(.data, .sample, .transcript, .abundance, .abundance_scaled = NULL)

### Arguments

`.data` | A 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |
`.sample` | The name of the sample column
`.transcript` | The name of the transcript/gene column
`.abundance` | The name of the transcript/gene abundance column
`.abundance_scaled` | The name of the transcript/gene scaled abundance column

### Details

'r lifecycle::badge("maturing")'

This function creates a tidybulk object and is useful if you want to avoid to specify .sample, .transcript and .abundance arguments all the times. The tidybulk object have an attribute called internals where these three arguments are stored as metadata. They can be extracted as attr(<object>, "internals").

### Value

A 'tidybulk' object

A 'tidybulk' object

A 'tidybulk' object

A 'tidybulk' object

A 'tidybulk' object

### Examples

    my_tt =  tidybulk(tidybulk::se_mini)

[Package tidybulk version 1.4.0 Index]