test_stratification_cellularity_ {tidybulk} | R Documentation

## Get differential composition information to a tibble using edgeR.

### Description

Get differential composition information to a tibble using edgeR.

### Usage

    test_stratification_cellularity_(
      .data,
      .formula,
      .sample = NULL,
      .transcript = NULL,
      .abundance = NULL,
      method = "cibersort",
      reference = NULL,
      ...
    )

### Arguments

`.data` | A tibble
`.formula` | a formula with no response variable, referring only to numeric variables
`.sample` | The name of the sample column
`.transcript` | The name of the transcript/gene column
`.abundance` | The name of the transcript/gene abundance column
`method` | A string character. Either "edgeR_quasi_likelihood" (i.e., QLF), "edgeR_likelihood_ratio" (i.e., LRT)
`reference` | A data frame. The transcript/cell_type data frame of integer transcript abundance
`significance_threshold` | A real between 0 and 1

### Value

A tibble with edgeR results

[Package tidybulk version 1.4.0 Index]