add_scaled_counts_bulk.calcNormFactor {tidybulk} | R Documentation

## Calculate the norm factor with calcNormFactor from limma

### Description

Calculate the norm factor with calcNormFactor from limma

### Usage

    add_scaled_counts_bulk.calcNormFactor(
      .data,
      reference = NULL,
      .sample = sample,
      .transcript = transcript,
      .abundance = count,
      method
    )

### Arguments

`.data` | A tibble
`reference` | A reference matrix, not sure if used anymore
`.sample` | The name of the sample column
`.transcript` | The name of the transcript/gene column
`.abundance` | The name of the transcript/gene abundance column
`method` | A string character. The scaling method passed to the backend function (i.e., edgeR::calcNormFactors; "TMM","TMMwsp","RLE","upperquartile")

### Value

A list including the filtered data frame and the normalization factors

[Package tidybulk version 1.4.0 Index]