tLOHCalc {tLOH} | R Documentation

## Assement of evidence for LOH in clusters from spatial transcriptomics data

### Description

Calculates Bayes factors for allele fractions at each SNP position. Uses dataframe output by tLOHDataImport

### Usage

    tLOHCalc(forCalcDF)

### Arguments

`forCalcDF` | Input dataframe generated from the tLOHDataImport function

### Value

Output is a dataframe with values that can be visualized with alleleFrequencyPlot() or aggregateCHRPlot()

### Author(s)

Michelle Webb

### Examples

    data('humanGBMsampleAC')
    df <- tLOHCalc(humanGBMsampleAC)
    head(df)

[Package tLOH version 1.0.0 Index]