alleleFrequencyPlot {tLOH} | R Documentation

## Visualization of data output from the tLOHCalc function

### Description

Creates a plot with panels for each cluster. The x-axis is chromosome, y-axis is allele frequency. Point color is Log10(1/K) where K is a Bayes factor

### Arguments

`df` | An input dataframe with merged cluster data
`sample` | Name of sample for plot title

### Value

Output is a plot of allele frequency for each cluster. Can be assigned to object and visualized individually. For each panel, the y axis has a min of 0 and max of 1

### Author(s)

Michelle Webb

### Examples

    data('humanGBMsampleAC')
    df <- tLOHCalc(humanGBMsampleAC)
    alleleFrequencyPlot(df,"Example")

[Package tLOH version 1.0.0 Index]