config.param {systemPipeR} | R Documentation

## Adding param file

### Description

Replace or adding a input configuration setting at "YML" param file

### Usage

    config.param(input_file = NULL, param, file = "default", silent = FALSE)

### Arguments

`input_file` | a `list` of parameters, `param file` path, or `SYSargs2` object.
`param` | object of class `list`, expressing the values and names to be added or replace at the command-line definition or the configuration files.
`file` | name and path of the new file. If set to `default`, the name of the write file will have the pattern: `<Date-Time>_<OriginalName>.yml`. If set to `append`, the `param` information it will be append on the same file.
`silent` | if set to TRUE, all messages returned by the function will be suppressed.

### Author(s)

Daniela Cassol

### Examples

    ## Not run:
    input_file <- system.file("extdata", "cwl/hisat2/hisat2-se/hisat2-mapping-se.yml", package="systemPipeR")
    param <- list(thread=10, fq=list(class="File", path="./results2"))
    input <- config.param(input_file=input_file, param, file="default")

    ## End(Not run)

[Package systemPipeR version 1.26.3 Index]