Package: srnadiff
Type: Package
Title: Finding differentially expressed unannotated genomic regions
        from RNA-seq data
Version: 1.11.0
Date: 2019-10-16
Authors@R: c(
    person("Zytnicki", "Matthias", email = "matthias.zytnicki@inra.fr",
            role = c("aut", "cre")),
    person("Gonzalez", "Ignacio", role = "aut"))
Description: srnadiff is a package that finds differently expressed regions from
   RNA-seq data at base-resolution level without relying on existing annotation.
   To do so, the package implements the identify-then-annotate methodology that
   builds on the idea of combining two pipelines approachs differential
   expressed regions detection and differential expression quantification.
License: GPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 3.6)
SystemRequirements: C++11
Imports: Rcpp (>= 0.12.8), methods, devtools, S4Vectors, GenomeInfoDb,
        rtracklayer, SummarizedExperiment, IRanges, GenomicRanges,
        DESeq2, Rsamtools, GenomicFeatures, GenomicAlignments,
        grDevices, Gviz, BiocParallel, BiocManager, BiocStyle
LinkingTo: Rcpp
RoxygenNote: 6.1.1
biocViews: ImmunoOncology, GeneExpression, Coverage, SmallRNA,
        Epigenetics, StatisticalMethod, Preprocessing,
        DifferentialExpression
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/srnadiff
git_branch: master
git_last_commit: a75c0fe
git_last_commit_date: 2020-10-27
Date/Publication: 2021-03-08
NeedsCompilation: yes
Packaged: 2021-03-09 01:36:52 UTC; biocbuild
Author: Zytnicki Matthias [aut, cre],
  Gonzalez Ignacio [aut]
Maintainer: Zytnicki Matthias <matthias.zytnicki@inra.fr>
Built: R 4.1.0; i386-w64-mingw32; 2021-03-09 05:30:25 UTC; windows
Archs: i386, x64
