plot_IQR_condition_exp {spqn} | R Documentation

## Get and plot the IQRs of submatrices of the correlation matrix.

### Description

The `get_IQR_condition_exp` function computes the IQRs of a set of 10 by 10 same-size bins that partition the correlation matrix, ordered according to expression level.

The `plot_IQR_condition_exp` function plots the IQR for each bin among a set of 10 by 10 same-size bins that partition the correlation matrix, with IQR denoted by the width of boxes in the plot.

### Usage

    get_IQR_condition_exp(cor_mat, ave_exp)
    plot_IQR_condition_exp(IQR_list)

### Arguments

`cor_mat` | correlation matrix, generated by gene expression matrix, with genes sorted by average expression levels.
`ave_exp` | vector, average expression level of each gene for the normalized gene expression matrix.
`IQR_list` | List, output of `get_IQR_condition_exp`.

### Value

A plot with boxes that shows the IQR of each bin

### Note

The mnemonic for `condition_exp` is ‘conditional on expression’.

### Examples

    if(require(spqnData)) {
        data(gtex.4k)
        cor_mat <- cor(t(assay(gtex.4k)))
        ave_logrpkm <- rowData(gtex.4k)$ave_logrpkm
        IQR_list <- get_IQR_condition_exp(cor_mat, ave_exp = ave_logrpkm)
        plot_IQR_condition_exp(IQR_list)
        }

[Package spqn version 1.4.0 Index]