Package: slinky
Type: Package
Title: Putting the fun in LINCS L1000 data analysis
Version: 1.10.0
Date: 2019-10-04
Author: Eric J. Kort
Maintainer: Eric J. Kort  <eric.kort@vai.org>
Description: Wrappers to query the L1000 metadata available via the clue.io 
    REST API as well as helpers for dealing with LINCS gctx files, extracting 
    data sets of interest, converting to SummarizedExperiment objects, and 
    some facilities for performing streamlined differential expression 
    analysis of these data sets.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 3.5.0)
Imports: SummarizedExperiment, curl, dplyr, foreach, httr, stats,
        utils, methods, readr, rhdf5, jsonlite, tidyr
Collate: 'slinky.R' 'slinky_clue.R' 'slinky_sumexp.R'
        'slinky_download.R' 'slinky_info.R' 'slinky_gctx.R'
        'slinky_scoring.R' 'slinky_chdir.R' 'slinky_ks.R'
Suggests: GeoDE, doParallel, testthat, knitr, rmarkdown, ggplot2,
        Rtsne, Biobase, BiocStyle
VignetteBuilder: knitr
RoxygenNote: 6.1.1
biocViews: DataImport, ThirdPartyClient, GeneExpression,
        DifferentialExpression, GeneSetEnrichment, PatternLogic
git_url: https://git.bioconductor.org/packages/slinky
git_branch: RELEASE_3_13
git_last_commit: 53b81e6
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-20 02:26:20 UTC; biocbuild
Built: R 4.1.0; ; 2021-05-20 10:08:03 UTC; windows
