slingCurves {slingshot} | R Documentation

## Extract simultaneous principal curves

### Description

Extract the simultaneous principal curves from an object containing `slingshot` output.

### Usage

    slingCurves(x, ...)

    ## S4 method for signature 'PseudotimeOrdering'
    slingCurves(x, as.df = FALSE)

    ## S4 method for signature 'SingleCellExperiment'
    slingCurves(x, ...)

    ## S4 method for signature 'SlingshotDataSet'
    slingCurves(x, as.df = FALSE)

### Arguments

`x` | an object containing `slingshot` output.
`...` | additional parameters to be passed to object-specific methods.
`as.df` | logical, whether to format the output as a `data.frame`, suitable for plotting with `ggplot`.

### Value

A list of smooth lineage curves, each of which is a `principal_curve` object.

### Examples

    data("slingshotExample")
    rd <- slingshotExample$rd
    cl <- slingshotExample$cl
    pto <- slingshot(rd, cl, start.clus = '1')
    slingCurves(pto)

[Package slingshot version 2.0.0 Index]