extractSite {sitePath} | R Documentation

## Extract tips for a single site

### Description

The functions in `sitePath` usually include the results on more than one site. The function `extractSite` can be used to extract the predicted result on a single site.

### Usage

    extractSite(x, site, ...)

    ## S3 method for class 'fixationSites'
    extractSite(x, site, ...)

### Arguments

`x` | A `fixationSites` or a `parallelSites` object. More type will be supported in the later version.
`site` | A site included in the result.
`...` | Other arguments

### Value

The predicted result of a single site

### Examples

    data(zikv_tree_reduced)
    data(zikv_align_reduced)
    tree <- addMSA(zikv_tree_reduced, alignment = zikv_align_reduced)
    mutations <- fixationSites(lineagePath(tree))
    extractSite(mutations, 139)

[Package sitePath version 1.8.4 Index]