reportDiffExp {singleCellTK} | R Documentation

## Get runDEAnalysis .html report

### Description

A function to generate .html Rmarkdown report containing the visualizations of the `runDEAnalysis` function output

### Usage

    reportDiffExp(inSCE, study, output_file = NULL, output_dir = NULL)

### Arguments

`inSCE` | A `SingleCellExperiment` object containing the output from `runDEAnalysis` function
`study` | The specific analysis to visualize, used as `analysisName` argument when running differential expression.
`output_file` | name of the generated file. If `NULL` then the output file name will be based on the name of the Rmarkdown template. Default `NULL`.
`output_dir` | name of the output directory to save the rendered file. If `NULL` the file is stored to the current working directory. Default `NULL`.

### Value

Saves the HTML report in the specified output directory.

[Package singleCellTK version 2.2.0 Index]