getBiomarker {singleCellTK} | R Documentation

## Given a list of genes and a SingleCellExperiment object, return the binary or continuous expression of the genes.

### Description

Given a list of genes and a SingleCellExperiment object, return the binary or continuous expression of the genes.

### Usage

    getBiomarker(
      inSCE,
      gene,
      binary = "Binary",
      useAssay = "counts",
      featureLocation = NULL,
      featureDisplay = NULL
    )

### Arguments

`inSCE` | Input SingleCellExperiment object.
`gene` | gene list
`binary` | "Binary" for binary expression or "Continuous" for a gradient. Default: "Binary"
`useAssay` | Indicates which assay to use. The default is "counts".
`featureLocation` | Indicates which column name of rowData to query gene.
`featureDisplay` | Indicates which column name of rowData to use to display feature for visualization.

### Value

getBiomarker(): A data.frame of expression values

### Examples

    getBiomarker(mouseBrainSubsetSCE, gene="C1qa")

[Package singleCellTK version 2.2.0 Index]