trimCounts {singleCellTK} | R Documentation

## Trim Counts

### Description

Trims an input count matrix such that each value greater than a threshold value and each value less than a provided lower threshold value is trimmed to the lower treshold value.

### Usage

    trimCounts(counts, trimValue = c(10, -10))

### Arguments

`counts` | matrix
`trimValue` | where trimValue[1] for upper threshold and trimValue[2] as lower threshold. Default is `c(10,-10)`

### Value

trimmed counts matrix

### Examples

    data(sce_chcl, package = "scds")
    assay(sce_chcl, "countsTrimmed") <- trimCounts(assay(sce_chcl, "counts"),
                                                   c(10, -10))

[Package singleCellTK version 2.2.0 Index]