scaterCPM {singleCellTK} | R Documentation

## scaterCPM Uses CPM from scater library to compute counts-per-million.

### Description

scaterCPM Uses CPM from scater library to compute counts-per-million.

### Usage

    scaterCPM(inSCE, assayName = "ScaterCPMCounts", useAssay = "counts")

### Arguments

`inSCE` | Input SingleCellExperiment object
`assayName` | New assay name for cpm data.
`useAssay` | Input assay

### Value

inSCE Updated SingleCellExperiment object

### Author(s)

Irzam Sarfraz

### Examples

    data(sce_chcl, package = "scds")
    sce_chcl <- scaterCPM(sce_chcl,"countsCPM", "counts")

[Package singleCellTK version 2.2.0 Index]