plotDimRed {singleCellTK} | R Documentation

## Plot dimensionality reduction from computed metrics including PCA, ICA, tSNE and UMAP

### Description

Plot dimensionality reduction from computed metrics including PCA, ICA, tSNE and UMAP

### Usage

    plotDimRed(
      inSCE,
      useReduction,
      showLegend = FALSE,
      xAxisLabel = NULL,
      yAxisLabel = NULL
    )

### Arguments

`inSCE` | Input SCE object
`useReduction` | Reduction to plot
`showLegend` | If legends should be plotted or not
`xAxisLabel` | Specify the label for x-axis. Default is `NULL` which will specify the label as 'x'.
`yAxisLabel` | Specify the label for y-axis. Default is `NULL` which will specify the label as 'y'.

### Value

plot object

### Examples

    data("mouseBrainSubsetSCE", package = "singleCellTK")
    plotDimRed(mouseBrainSubsetSCE, "PCA_logcounts")

[Package singleCellTK version 2.2.0 Index]