seuratSCTransform {singleCellTK} | R Documentation

## seuratSCTransform Runs the SCTransform function to transform/normalize the input data

### Description

seuratSCTransform Runs the SCTransform function to transform/normalize the input data

### Usage

    seuratSCTransform(
      inSCE,
      normAssayName = "SCTCounts",
      useAssay = "counts",
      verbose = TRUE
    )

### Arguments

`inSCE` | Input SingleCellExperiment object
`normAssayName` | Name for the output data assay. Default `"SCTCounts"`.
`useAssay` | Name for the input data assay. Default `"counts"`.
`verbose` | Logical value indicating if informative messages should be displayed. Default is `TRUE`.

### Value

Updated SingleCellExperiment object containing the transformed data

### Examples

    data("mouseBrainSubsetSCE", package = "singleCellTK")
    mouseBrainSubsetSCE <- seuratSCTransform(mouseBrainSubsetSCE)

[Package singleCellTK version 2.2.0 Index]