generateMeta {singleCellTK} | R Documentation

## Generate manifest file for droplet and cell count data

### Description

Generate manifest file for droplet and cell count data

### Usage

    generateMeta(
      dropletSCE = NULL,
      cellSCE = NULL,
      samplename,
      dir,
      HTAN = TRUE,
      dataType = c("Droplet", "Cell", "Both")
    )

### Arguments

`dropletSCE` | A SingleCellExperiment object containing droplet count matrix data
`cellSCE` | A SingleCellExperiment object containing cell count matrix data
`samplename` | The sample name of the SingleCellExperiment objects
`dir` | The output directory of the SCTK QC pipeline.
`HTAN` | Whether generate manifest file with the format required by HTAN. Default is TRUE.
`dataType` | Type of the input data. It can be one of "Droplet", "Cell" or "Both".

### Value

A SingleCellExperiment object which combines all objects in sceList. The colData is merged.

### Examples

    data(scExample, package = "singleCellTK")
    generateMeta(sce, dir = ".", samplename = "Sample",
     HTAN = TRUE)

[Package singleCellTK version 2.2.0 Index]