plotBarcodeRankDropsResults {singleCellTK} | R Documentation

## Plots for runEmptyDrops outputs.

### Description

A wrapper function which visualizes outputs from the runEmptyDrops function stored in the colData slot of the SingleCellExperiment object via plots.

### Usage

    plotBarcodeRankDropsResults(
      inSCE,
      sample = NULL,
      defaultTheme = TRUE,
      dotSize = 1,
      titleSize = 18,
      axisLabelSize = 18,
      axisSize = 15,
      legendSize = 15
    )

### Arguments

`inSCE` | Input SingleCellExperiment object with saved dimension reduction components or a variable with saved results from runBarcodeRankDrops. Required.
`sample` | Character vector. Indicates which sample each cell belongs to. Default NULL.
`defaultTheme` | Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE.
`dotSize` | Size of dots. Default 1.
`titleSize` | Size of title of plot. Default 18.
`axisLabelSize` | Size of x/y-axis labels. Default 18.
`axisSize` | Size of x/y-axis ticks. Default 15.
`legendSize` | size of legend. Default 15.

### Value

list of .ggplot objects

### Examples

    data(scExample, package="singleCellTK")
    sce <- runBarcodeRankDrops(inSCE=sce)
    plotBarcodeRankDropsResults(inSCE=sce)

[Package singleCellTK version 2.2.0 Index]