scranModelGeneVar {singleCellTK} | R Documentation

## scranModelGeneVar Generates and stores variability data from scran::modelGeneVar in the input singleCellExperiment object

### Description

scranModelGeneVar Generates and stores variability data from scran::modelGeneVar in the input singleCellExperiment object

### Usage

    scranModelGeneVar(inSCE, assayName)

### Arguments

`inSCE` | a singleCellExperiment object
`assayName` | selected assay to compute variable features from

### Value

inSCE updated singleCellExperiment object that contains variable feature metrics in rowData

### Author(s)

Irzam Sarfraz

### Examples

    data(sce_chcl, package = "scds")
    sce_chcl <- scranModelGeneVar(sce_chcl, "counts")

[Package singleCellTK version 2.2.0 Index]