exportSCEToSeurat {singleCellTK} | R Documentation

## Export data in Seurat object

### Description

Export data in Seurat object

### Usage

    exportSCEToSeurat(
      inSCE,
      prefix = "sample",
      outputDir = "./",
      overwrite = TRUE,
      copyColData = TRUE,
      copyReducedDim = TRUE,
      copyDecontX = TRUE
    )

### Arguments

`inSCE` | A SingleCellExperiment object that contains the data. QC metrics are stored in colData of the singleCellExperiment object.
`prefix` | Prefix to use for the name of the output file. Default `"sample"`.
`outputDir` | Path to the directory where outputs will be written. Default is the current working directory.
`overwrite` | Boolean. Whether overwrite the output if it already exists in the outputDir. Default `TRUE`.
`copyColData` | Boolean. Whether copy 'colData' of SCE object to the 'meta.data' of Seurat object. Default `TRUE`.
`copyReducedDim` | Boolean. Whether copy 'reducedDims' of the SCE object to the 'reductions' of Seurat object. Default `TRUE`.
`copyDecontX` | Boolean. Whether copy 'decontXcounts' assay of the SCE object to the 'assays' of Seurat object. Default `TRUE`.

### Value

Generates a Seurat object containing data from `inSCE`.

[Package singleCellTK version 2.2.0 Index]