sampleSummaryStats {singleCellTK} | R Documentation

## Generate table of SCTK QC outputs.

### Description

Creates a table of QC metrics generated from QC algorithms via either kable or csv file.

### Usage

    sampleSummaryStats(inSCE, sample = NULL, useAssay = "counts", simple = TRUE)

### Arguments

`inSCE` | Input SingleCellExperiment object with saved assay data and/or colData data. Required.
`sample` | Character vector. Indicates which sample each cell belongs to.
`useAssay` | A string specifying which assay in the SCE to use. Default 'counts'.
`simple` | Boolean. Indicates whether to generate a table of only basic QC stats (ex. library size), or to generate a summary table of all QC stats stored in the inSCE.

### Value

A matrix/array object.

### Examples

    data(scExample, package = "singleCellTK")
    sce <- subsetSCECols(sce, colData = "type != 'EmptyDroplet'")
    sampleSummaryStats(sce, simple = TRUE)

[Package singleCellTK version 2.2.0 Index]