simplifyEnrichment {simplifyEnrichment} | R Documentation

## Simplify functional enrichment results

### Description

Simplify functional enrichment results

### Usage

    simplifyEnrichment(mat, method = "binary_cut", control = list(),
        plot = TRUE, term = NULL, verbose = TRUE,
        column_title = qq("@{nrow(mat)} terms clustered by '@{method}'"),
        ht_list = NULL, ...)

### Arguments

`mat` | A similarity matrix.
`method` | Method for clustering the matrix. See `cluster_terms`.
`control` | A list of parameters for controlling the clustering method, passed to `cluster_terms`.
`plot` | Whether to make the heatmap.
`term` | The full name or the description of the corresponding terms.
`column_title` | Column title for the heatmap.
`verbose` | Whether to print messages.
`ht_list` | A list of additional heatmaps added to the left of the similarity heatmap.
`...` | Arguments passed to `ht_clusters`.

### Details

The usage is the same as `simplifyGO`, except you need to manually provide the term names by `term` argument if you want to draw the word clouds.

### Examples

    # There is no example
    NULL

[Package simplifyEnrichment version 1.2.0 Index]