difference_score {simplifyEnrichment} | R Documentation

## Difference score

### Description

Difference score

### Usage

    difference_score(mat, cl)

### Arguments

`mat` | The similarity matrix.
`cl` | Cluster labels.

### Details

This function measures the different between the similarity values for the terms that belong to the same clusters and in different clusters. The difference score is the Kolmogorov-Smirnov statistic between the two distributions.

### Value

A numeric scalar.

### Examples

    mat = readRDS(system.file("extdata", "random_GO_BP_sim_mat.rds",
        package = "simplifyEnrichment"))
    cl = binary_cut(mat)
    difference_score(mat, cl)

[Package simplifyEnrichment version 1.2.0 Index]