get_treat_info {signatureSearch} | R Documentation

## Get Treatment Information

### Description

Get treatment information including perturbation name, cell type and perturbation type from the reference database

### Usage

    get_treat_info(refdb)

### Arguments

`refdb` | character(1), one of "lincs", "lincs_expr", "cmap" or "cmap_expr" when using the pre-generated CMAP/LINCS databases or path to the HDF5 file generated with the `build_custom_db` function. The details is shown in the 'refdb' argument of the `qSig` function

### Value

tibble object with 'pert', 'cell', 'pert_type' columns

### Examples

    refdb <- system.file("extdata", "sample_db.h5", package="signatureSearch")
    treat_info <- get_treat_info(refdb)

[Package signatureSearch version 1.6.3 Index]