chromHMM_demo_overlaps_gr {seqsetvis} | R Documentation

## overlap of MCF10A CTCF with MCF7 chromHMM states, hg38.

### Description

overlap of MCF10A CTCF with MCF7 chromHMM states, hg38.

### Format

a GRanges object of length 98 with 10 logical metadata columns, 1 per state.

### Details

part of `chromHMM_demo_data`

the result of ssvOverlapIntervalSets() on MCF10A CTCF peaks and MCF7 chromHMM states with use_first = TRUE

first (the MCF10A peaks) and no_hit columns have been removed each remaining column represents MCF10A peaks overlapping with a state.

[Package seqsetvis version 1.12.0 Index]