centerGRangesAtMax {seqsetvis} | R Documentation

## Centers query GRanges at maximum signal in prof_dt.

### Description

Centers query GRanges at maximum signal in prof_dt.

### Usage

    centerGRangesAtMax(prof_dt, qgr, x_ = "x", y_ = "y", by_ = "id", width = 1)

### Arguments

`prof_dt` | a GRanges or data.table as returned by ssvFetch*.
`qgr` | the GRanges used to query ssvFetch* as the qgr argument.
`x_` | positional variable. Should almost always be the default, "x".
`y_` | the signal value variable. Likely the default value of "y" but could be "y_norm" if append_ynorm was applied to data.
`by_` | region identifier variable. Should almost always be the default, "id".
`width` | Desired width of final regions. Default is 1.

### Value

a GRanges with same mcols as qgr that has been centered based on signal in prof_dt and with regions of specified width.

### Examples

    centerGRangesAtMax(CTCF_in_10a_profiles_dt, CTCF_in_10a_overlaps_gr)
    centerGRangesAtMax(CTCF_in_10a_profiles_gr, CTCF_in_10a_overlaps_gr)

[Package seqsetvis version 1.12.0 Index]