test_profile_3 {seqCAT} | R Documentation

## SNV profile 3

### Description

SNV profile in GRanges format from "sample3", originating from the test_profile_3.txt in the inst/extdata directory, for use in unit tests.

### Usage

    data(test_profile_3)

### Format

A GRanges object with 99 elements and 9 metadata columns:

rsID

  mutation ID, if available

REF

  reference allele

ALT

  alternative allele

DP

  total variant depth

AD1

  allelic depth, allele 1

AD2

  allelic depth, allele 2

A1

  allele 1

A2

  allele 2

sample

  sample name

[Package seqCAT version 1.14.1 Index]