computeSumFactors {scran} | R Documentation

## Normalization by deconvolution

### Description

Scaling normalization of single-cell RNA-seq data by deconvolving size factors from cell pools. These functions have been moved to the scuttle package and are just retained here for compatibility.

### Usage

    computeSumFactors(...)

    calculateSumFactors(...)

### Arguments

`...` | Further arguments to pass to `pooledSizeFactors` or `computePooledFactors`.

### Value

For `calculateSumFactors`, a numeric vector of size factors returned by `pooledSizeFactors`.

For `computeSumFactors`, a SingleCellExperiment containing the size factors in its `sizeFactors`, as returned by `computePooledFactors`.

### Author(s)

Aaron Lun

[Package scran version 1.20.1 Index]