biplot_interactive {scone} | R Documentation

## Interactive biplot

### Description

This is a wrapper around `biplot_color`, creating a shiny gadget to allow the user to select specific points in the graph.

### Usage

    biplot_interactive(x, ...)

### Arguments

`x` | a `SconeExperiment` object.
`...` | passed to `biplot_color`.

### Details

Since this is based on the shiny gadget feature, it will not work in static documents, such as vignettes or markdown / knitr documents. See `biplot_color` for more details on the internals.

### Value

A `SconeExperiment` object representing selected methods.

### Examples

    mat <- matrix(rpois(1000, lambda = 5), ncol=10)
    colnames(mat) <- paste("X", 1:ncol(mat), sep="")
    obj <- SconeExperiment(mat)
    res <- scone(obj, scaling=list(none=identity,
       uq=UQ_FN, deseq=DESEQ_FN,  fq=FQT_FN),
    evaluate=TRUE, k_ruv=0, k_qc=0, eval_kclust=2,
       bpparam = BiocParallel::SerialParam())
    ## Not run:
    biplot_interactive(res)

    ## End(Not run)

[Package scone version 1.16.1 Index]