cellCellSetting {scTensor} | R Documentation

## Parameter setting for scTensor

### Description

All parameters is saved to metadata slot of SingleCellExperiment object.

### Usage

    cellCellSetting(sce, lrbase, label, lr.evidence="all", color=NULL)

### Arguments

`sce` | A object generated by instantization of SingleCellExperiment-class.
`lrbase` | Ligand-Receptor database (LRBase.XXX.eg.db-type package).
`label` | Cellular label information for distingusishing which cells belong to common celltypes.
`lr.evidence` | The evidence code for L-R pair list (Default: "all"). When you specify "known", DLRP, IUPHAR, HPMR, CELLPHONEDB, SINGLECELLSIGNALR are searched, and other databases are searched, when you specify "putative". You can also specify multiple databases at once (e.g. c("SWISSPROT_STRING", "TREMBL_STRING")). cf. https://github.com/rikenbit/lrbase-workflow
`color` | Color scheme for adding color against the cells (Default: NULL). If the value is not specified, automatically the color vector is generated.

### Value

The result is saved to metadata slot of SingleCellExperiment object.

### Author(s)

Koki Tsuyuzaki

### See Also

`SingleCellExperiment`.

### Examples

    showMethods("cellCellSetting")

[Package scTensor version 2.2.0 Index]