Package: scRepertoire
Title: A toolkit for single-cell immune receptor profiling
Version: 1.2.0
Authors@R: c(
    person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "ncborch@gmail.com"))
Description: scRepertoire was built to process data derived from the 10x Genomics Chromium Immune Profiling for both T-cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows and subsequently interacts with the popular Seurat and SingleCellExperiment R packages. It also allows for general analysis of single-cell clonotype information without the use of expression information. The package functions as a wrapper for Startrac and powerTCR R packages.
License: Apache License 2.0
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
biocViews: Software, ImmunoOncology, SingleCell, Classification,
        Annotation, Sequencing
Depends: ggplot2, R (>= 4.0)
Imports: Biostrings, dplyr, reshape2, ggalluvial, stringr, vegan,
        powerTCR, SummarizedExperiment, plyr, parallel, doParallel,
        methods, utils, rlang
Suggests: knitr, rmarkdown, BiocStyle, scater, circlize, scales, Seurat
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/scRepertoire
git_branch: RELEASE_3_13
git_last_commit: 1daa495
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-20 02:17:37 UTC; biocbuild
Author: Nick Borcherding [aut, cre]
Maintainer: Nick Borcherding <ncborch@gmail.com>
Built: R 4.1.0; ; 2021-05-20 09:59:56 UTC; windows
