SangerRead-class-writeFastaSR {sangeranalyseR} | R Documentation

## writeFastaSR

### Description

A SangerRead method which writes the sequence into Fasta files.

### Usage

    ## S4 method for signature 'SangerRead'
    writeFastaSR(object, outputDir = NULL,
      compress = FALSE, compression_level = NA)

### Arguments

`object` | A SangerRead S4 instance.
`outputDir` | The output directory of the generated FASTA file.
`compress` | Like for the `save` function in base R, must be `TRUE` or `FALSE` (the default), or a single string specifying whether writing to the file is to use compression. The only type of compression supported at the moment is "gzip". This parameter will be passed to `writeXStringSet` function in Biostrings package.
`compression_level` | This parameter will be passed to `writeXStringSet` function in Biostrings package.

### Value

The output absolute path to the FASTA file.

### Examples

    data("sangerReadFData")
    writeFastaSR(sangerReadFData)

[Package sangeranalyseR version 1.2.0 Index]