ChromatogramParam-class {sangeranalyseR} | R Documentation

## ChromatogramParam

### Description

An S4 class storing chromatogram related inputs in a SangerRead S4 object.

### Slots

`baseNumPerRow`

  It defines maximum base pairs in each row. The default value is `100`.

`heightPerRow`

  It defines the height of each row in chromatogram. The default value is `200`.

`signalRatioCutoff`

  The ratio of the height of a secondary peak to a primary peak. Secondary peaks higher than this ratio are annotated. Those below the ratio are excluded. The default value is `0.33`.

`showTrimmed`

  The logical value storing whether to show trimmed base pairs in chromatogram. The default value is `TRUE`.

### Author(s)

Kuan-Hao Chao

### Examples

    Chromatogram <- new("ChromatogramParam",
                         baseNumPerRow      = 100,
                         heightPerRow       = 200,
                         signalRatioCutoff  = 0.33,
                         showTrimmed        = TRUE)

[Package sangeranalyseR version 1.2.0 Index]