SangerRead-class-generateReportSR {sangeranalyseR} | R Documentation

## generateReportSR

### Description

A SangerRead method which generates final reports of the SangerRead instance.

### Usage

    ## S4 method for signature 'SangerRead'
    generateReportSR(object, outputDir,
      navigationContigFN = NULL, navigationAlignmentFN = NULL)

### Arguments

`object` | A SangerRead S4 instance.
`outputDir` | The output directory of the generated HTML report.
`navigationContigFN` | The internal parameter passed to HTML report. Users should not modify this parameter on their own.
`navigationAlignmentFN` | The internal parameter passed to HTML report. Users should not modify this parameter on their own.

### Value

The output absolute path to the SangerRead's HTML file.

### Examples

    data("sangerReadFData")
    ## Not run:
    generateReportSR(sangerReadFData)
    ## End(Not run)

[Package sangeranalyseR version 1.2.0 Index]