Tuch {sSeq} | R Documentation

## An example of real experiment.

### Description

A subset of the real experiment Tuch et al. It is used as an example for running some functions in this package.

### Usage

    data(Tuch)

### Format

A data.frame containing 6 columns and 10453 rows.

### Details

It compares the expression of genes in normal human tissues and in tissues with oral squamous cell carcinoma. The experiment had a paired design in that pairs of normal and tumor samples were obtained from three patient. The six libraries were sequenced using the SOLiD platform.

### Source

The table of read counts was downloaded from GEO (accession GSE20116).

### References

Tuch, B. et al. (2010). Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations. PloS One, 5, e9317.

### Examples

    data(Tuch);
    head(countsTable);

[Package sSeq version 1.30.0 Index]