cpneTrack {rtracklayer} | R Documentation

## CPNE1 SNP track

### Description

A `GRanges` object (created by the `GGtools` package) with features from a subset of the SNPs on chromosome 20 from 60 HapMap founders in the CEU cohort. Each SNP has an associated data value indicating its association with the expression of the CPNE1 gene according to a Cochran-Armitage 1df test. The top 5000 scoring SNPs were selected for the track.

### Usage

    data(cpneTrack)

### Format

Each feature (row) is a SNP. The association test scores are accessible via `score`.

### Source

Vince Carey and the `GGtools` package.

### Examples

    data(cpneTrack)
    plot(start(cpneTrack), score(cpneTrack))

[Package rtracklayer version 1.52.1 Index]