cvgd-class {ribosomeProfilingQC} | R Documentation

## Class `"cvgd"`

### Description

An object of class `"cvgd"` represents output of `coverageDepth`.

### Usage

    cvgd(...)

    ## S4 method for signature 'cvgd'
    x$name

    ## S4 replacement method for signature 'cvgd'
    x$name <- value

    ## S4 method for signature 'cvgd,ANY,ANY'
    x[[i, j, ..., exact = TRUE]]

    ## S4 replacement method for signature 'cvgd,ANY,ANY,ANY'
    x[[i, j, ...]] <- value

    ## S4 method for signature 'cvgd'
    show(object)

### Arguments

`...` | Each argument in ... becomes an slot in the new `"cvgd"`-class.
`x` | cvgd object.
`name` | A literal character string or a name (possibly backtick quoted).
`value` | value to replace.
`i, j` | indexes specifying elements to extract or replace.
`exact` | see Extract
`object` | cvgd object.

### Value

A cvgd object.

### Slots

`coverage`

  `"list"`, list of CompressedRleList, specify the coverage of features of each sample.

`granges`

  CompressedGRangesList, specify the features.

### Examples

    cvgd()

[Package ribosomeProfilingQC version 1.4.0 Index]