servermatrix {recountmethylation} | R Documentation

## servermatrix

### Description

Called by get_rmdl() to get a matrix of database files and file info from the server. Verifies valid versions and timestamps in filenames, and that h5se directories contain both an assays and an se.rds file.

### Usage

    servermatrix(
      dn = NULL,
      sslver = FALSE,
      printmatrix = TRUE,
      url = "https://methylation.recount.bio/",
      verbose = FALSE
    )

### Arguments

`dn` | Server data returned from RCurl (default NULL).
`sslver` | Whether to use SSL certificate authentication for server connection (default FALSE).
`printmatrix` | Whether to print the data matrix to console (default TRUE).
`url` | Server website url (default "https://methylation.recount.bio/").
`verbose` | Whether to show verbose messages (default FALSE).

### Value

Matrix of server files and file metadata

### See Also

get_rmdl, smfilt

### Examples

    dn <- "remethdb-h5se_gr-test_0-0-1_1590090412 29-May-2020 07:28 -"
    sm <- get_servermatrix(dn = dn)

[Package recountmethylation version 1.2.3 Index]