rgse {recountmethylation} | R Documentation

## Form an RGChannelSet from a list containing signal data matrices

### Description

Forms an RGChannelSet from signal data list. This is called by certain queries to h5 files.

### Usage

    rgse(ldat, verbose = FALSE)

### Arguments

`ldat` | List of raw signal data query results. Must include 2 data.frame objects named "redsignal" and "greensignal."
`verbose` | Whether to post status messages.

### Value

Returns a RGChannelSet object from raw signal dataset queries.

### See Also

getrg(), RGChannelSet()

### Examples

    path <- system.file("extdata", "h5test", package = "recountmethylation")
    fn <- list.files(path)
    dbpath <- file.path(path, fn)
    rg <- getrg(dbn = dbpath, all.gsm = TRUE, metadata = FALSE)
    dim(rg) # [1] 11162     2
    class(rg)
    # [1] "RGChannelSet"
    # attr(,"package")
    # [1] "minfi"

[Package recountmethylation version 1.2.3 Index]