downloadPathwayArchive {rWikiPathways} | R Documentation

## Download Pathway Archive

### Description

Access the monthly archives of pathway content from WikiPathways.

### Usage

    downloadPathwayArchive(
      date = "current",
      organism = NULL,
      format = c("gpml", "gmt", "svg"),
      destpath = "./"
    )

### Arguments

`date` | (optional) The timestamp for a monthly release (e.g., 20171010) or "current" (default) for latest release.
`organism` | (optional) A particular species. See listOrganisms.
`format` | (optional) Either gpml (default), gmt or svg.
`destpath` | (optional) Destination path for file to be downloaded to. Default is current workding directory.

### Details

If you do not specify an organism, then an archive file will not be downloaded. Rather, the archive will be opened in a tab in your default browser.

### Value

Filename of downloaded file or an opened tab in default browser

### See Also

readPathwayGMT

### Examples

    downloadPathwayArchive()  ## open in browser
    downloadPathwayArchive(format="gmt")  ## open in browser
    downloadPathwayArchive(date="20171010", format="svg")  ## open in browser
    downloadPathwayArchive(date="20171010", organism="Mus musculus", format="svg")  ## download file
    downloadPathwayArchive(organism="Mus musculus")  ## download file

[Package rWikiPathways version 1.12.0 Index]