availableOntologies-GreatJob-method {rGREAT} | R Documentation

## All available ontology names

### Description

All available ontology names

### Usage

    ## S4 method for signature 'GreatJob'
    availableOntologies(job, category = NULL)

### Arguments

`job` | a `GreatJob-class` instance
`category` | one or multiple categories. All available categories can be get by `availableCategories`

### Details

The values of the supported ontologies sometime change. You should run the function to get the real-time values. The meaning of ontology returned is quite self-explained by the name.

### Value

The returned values is a vector of ontologies.

### Author(s)

Zuguang gu <z.gu@dkfz.de>

### Examples

    # note the `job` was generated from GREAT 3.0.0
    job = readRDS(system.file("extdata", "job.rds", package = "rGREAT"))
    availableOntologies(job)
    availableOntologies(job, category = "Pathway Data")

[Package rGREAT version 1.24.0 Index]