read_base_content {qckitfastq} | R Documentation

## Compute nucleotide content per position for a single base pair. Wrapper function around seqTools.

### Description

Compute nucleotide content per position for a single base pair. Wrapper function around seqTools.

### Usage

    read_base_content(fseq, content)

### Arguments

`fseq` | a seqTools::fastqq object
`content` | nucleotide. Options are "A","T","G","C","N"(either capital or lower case)

### Value

Nucleotide sequence content per position.

### Author(s)

Wenyue Xing, wenyue_xing@brown.edu, August Guang august_guang@brown.edu

### Examples

    infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
    fseq <- seqTools::fastqq(infile,k=6)
    read_base_content(fseq,"A")

[Package qckitfastq version 1.8.0 Index]