parseSplicingEvent {psichomics} | R Documentation

## Parse alternative splicing event identifier

### Description

Parse alternative splicing event identifier

### Usage

    parseSplicingEvent(
      event,
      char = FALSE,
      pretty = FALSE,
      extra = NULL,
      coords = FALSE,
      data = NULL
    )

### Arguments

`event` | Character: event identifier
`char` | Boolean: return character vector instead of list with parsed values?
`pretty` | Boolean: return a prettier name of the event identifier?
`extra` | Character: extra information to add (such as species and assembly version); only used if `pretty = TRUE` and `char = TRUE`
`coords` | Boolean: display extra coordinates regarding the alternative and constitutive regions of alternative splicing events? Only used if `char = FALSE`
`data` | Matrix or data frame: alternative splicing information

### Value

Data.frame containing type of event, chromosome, strand, gene and position of alternative splicing events or character with that same information (depending on what is available)

### Examples

    events <- c(
      "A3SS_15_+_63353138_63353912_63353397_TPM1",
      "A3SS_11_-_61118463_61117115_61117894_CYB561A3",
      "A5SS_21_+_48055675_48056459_48056808_PRMT2",
      "A5SS_1_-_1274742_1274667_1274033_DVL1",
      "AFE_9_+_131902430_131901928_131904724_PPP2R4",
      "AFE_5_-_134686513_134688636_134681747_H2AFY",
      "ALE_12_+_56554104_56554410_56555171_MYL6",
      "ALE_8_-_38314874_38287466_38285953_FGFR1",
      "SE_9_+_6486925_6492303_6492401_6493826_UHRF2",
      "SE_19_-_5218431_5216778_5216731_5215606_PTPRS",
      "MXE_15_+_63335142_63335905_63336030_63336226_63336351_63349184_TPM1",
      "MXE_17_-_74090495_74087316_74087224_74086478_74086410_74085401_EXOC7")
    parseSplicingEvent(events)

[Package psichomics version 1.18.6 Index]