getSplicingEventFromGenes {psichomics} | R Documentation

## Get alternative splicing events from genes or vice-versa

### Description

Get alternative splicing events from genes or vice-versa

### Usage

    getSplicingEventFromGenes(genes, ASevents, data = NULL)

    getGenesFromSplicingEvents(ASevents, data = NULL)

### Arguments

`genes` | Character: gene symbols (or TCGA-styled gene symbols)
`ASevents` | Character: alternative splicing events
`data` | Matrix or data frame: alternative splicing information

### Details

A list of alternative splicing events is required to run `getSplicingEventFromGenes`

### Value

Named character containing alternative splicing events or genes and their respective genes or alternative splicing events as names (depending on the function in use)

### Examples

    ASevents <- c("SE_1_+_201763003_201763300_201763374_201763594_NAV1",
                  "SE_1_+_183515472_183516238_183516387_183518343_SMG7",
                  "SE_1_+_183441784_183471388_183471526_183481972_SMG7",
                  "SE_1_+_181019422_181022709_181022813_181024361_MR1",
                  "SE_1_+_181695298_181700311_181700367_181701520_CACNA1E")
    genes <- c("NAV1", "SMG7", "MR1", "HELLO")

    # Get splicing events from genes
    matchedASevents <- getSplicingEventFromGenes(genes, ASevents)

    # Names of matched events are the matching input genes
    names(matchedASevents)
    matchedASevents

    # Get genes from splicing events
    matchedGenes <- getGenesFromSplicingEvents (ASevents)

    # Names of matched genes are the matching input alternative splicing events
    names(matchedGenes)
    matchedGenes

[Package psichomics version 1.18.6 Index]