getAbsolutePromoterActivity {proActiv} | R Documentation

## Prepare the absolute promoter activity table including the promoter and gene ids

### Description

Prepare the absolute promoter activity table including the promoter and gene ids

### Usage

    getAbsolutePromoterActivity(
      junctionReadCounts,
      promoterAnnotation,
      log2 = TRUE,
      pseudocount = 1
    )

### Arguments

`junctionReadCounts` | Matrix of junction read counts (rows: promoters, cols: samples)
`promoterAnnotation` | A PromoterAnnotation object containing the intron ranges, promoter coordinates and the promoter id mapping
`log2` | Logical indicating whether log2 read counts should be used (default: TRUE) or not
`pseudocount` | Number to be used for log2 as pseudocount if log2 is TRUE

### Value

data.frame of absolute promoter activity with promoter and gene ids

[Package proActiv version 1.2.0 Index]