16c46ab9a666797523c52a116a3c1e93 *CITATION
2d10351abe3198a9f83fce757f90d26f *DESCRIPTION
81c66aa8111d8ab9c1426ed9961f3e3b *INDEX
63258b87126213f45746378ed0115347 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
8d87b6c110ce107e7eea7419a8451976 *Meta/hsearch.rds
7da159111fcba91154a9e5b9a8260847 *Meta/links.rds
5e7df5e6649305a1955fff85d5ada0d3 *Meta/nsInfo.rds
d72177761d2609a35c9dd05987afb66d *Meta/package.rds
403062011e4ad8130b45ebfbbb7c1403 *Meta/vignette.rds
ee5e13c6344dd81e1ae6ae2e5c21aaa8 *NAMESPACE
3fdcdc83f41a05d57b850231e2e1ab49 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/pram
65ca718000d60c40e8c6e175f3d73ce9 *R/pram.rdb
d9a066199a8d272ee1a3ae05166f5fc7 *R/pram.rdx
9e58ad003138d1c66a70d0d10db3d418 *doc/index.html
824b85569f10f7b0abc4c47926d0b13a *doc/pram.R
a4e2076d4e1656856bc8f3c1da25efc5 *doc/pram.Rmd
9e990f8680cf3c481c0f674ae50c151b *doc/pram.pdf
6bc8dfb54b9e62665f41741b2609367c *extdata/bam/CMPRep1.sortedByCoord.clean.bam
3c00bc5d9e5b4e0f16b1f0a1821d63d7 *extdata/bam/CMPRep1.sortedByCoord.clean.chr10.plus.bam
cd18f07d323eec235e4f443244268ec9 *extdata/bam/CMPRep1.sortedByCoord.clean.chr12.minus.bam
ddf08b29acc438c11554daf480bf1699 *extdata/bam/CMPRep1.sortedByCoord.raw.bam
aca49d6b6a2ffd81f81b2f56d0b40e02 *extdata/bam/CMPRep2.sortedByCoord.clean.bam
ab783a9429dbd68054ab1e202589d6f6 *extdata/bam/CMPRep2.sortedByCoord.raw.bam
c72525196731ba5c7a453634e02c245e *extdata/benchmark/plcf.tsv
0dc29665caca31ba0542276d3b7609c0 *extdata/benchmark/tgt.tsv
312a28fd4191383057964266227d6622 *extdata/chromsize/hg19.tsv.gz
0ec9c7b98e125033f6b712211c82e71e *extdata/chromsize/hg38.tsv.gz
7a546ec366f0387ef4d6da49fec1b6d1 *extdata/chromsize/mm10.tsv.gz
bcfe201a8da1b4b4dd7e69d6962d82fc *extdata/chromsize/mm9.tsv.gz
c91b4bd76f65ff4982a7c32187a194de *extdata/demo/SZP.bam
2bff64cd1a98e2a008a3a05aa3fa54e0 *extdata/demo/TLC.bam
c8ff38a72ebd56b20e9b954a12f6800e *extdata/demo/in.gtf
88418451ac78fa3dd45bf4bd49a8f5e5 *extdata/gtf/defIgRanges_in.gtf
162b125396864c90049ee15a5fca22a6 *extdata/gtf/gnc_v24_minus_chr18.gtf
a7cc0cbac78919adb1e6fcb74f8e6ee1 *extdata/gtf/ig_mm10_chr12.gtf
a3b6aa1d02a8bb0f7997d6607c45caf3 *extdata/gtf/selModel_in.gtf
0624089e8191beec85a3ce578e059b08 *extdata/gtf/selModel_out.gtf
e88e53a580084e44f21144a99e466015 *extdata/vignettes/pram.pdf
b97f7004555545b4e69a075419d407b2 *help/AnIndex
84f2fbce84ddab2824374c55bbea2cbd *help/aliases.rds
ce6bc1f3ee830e05acbea95274bb1355 *help/buildModel.html
4d8f61501bd3ba59adcbf4d911594b02 *help/defIgRanges.html
3bbc1c695702a9644cc6313445444abe *help/evalModel,GRanges,GRanges-method.html
3bbc1c695702a9644cc6313445444abe *help/evalModel,character,character-method.html
3bbc1c695702a9644cc6313445444abe *help/evalModel,character,data.table-method.html
3bbc1c695702a9644cc6313445444abe *help/evalModel,data.table,data.table-method.html
3bbc1c695702a9644cc6313445444abe *help/evalModel.html
4ffb33211459acf3b03fc9fcef8f291f *help/paths.rds
4e689b598c54aa254df39dad287318ab *help/pram.rdb
96df3e9a37c74fb4dec0c6963d210eba *help/pram.rdx
f4c2ca20532eb24c2d052052a081a7a7 *help/prepIgBam.html
e5b0f933cd5f3f6598ffa527e9ba41a9 *help/runPRAM.html
0687592606a9a8e90edce818a55192da *help/selModel.html
908bbed2cba4846d8e11e3e69ef6ccdb *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
00b7b4d597d7f32bc907dff7217e5bfc *html/buildModel.html
af2c1ab2dd344eb52f260f4459bf71d7 *html/defIgRanges.html
bcc45f2bc1650e70229e85bb9015af33 *html/evalModel.html
bbefe1b9b15696605aa1ce574d725444 *html/prepIgBam.html
b4e3c1f4028243701fb88db790b29560 *html/runPRAM.html
e4d6e8d909a1312e1c93b800bc09548a *html/selModel.html
