reduce_ranges {plyranges} | R Documentation

## Reduce then aggregate a Ranges object

### Description

Reduce then aggregate a Ranges object

### Usage

    reduce_ranges(.data, ...)

    reduce_ranges_directed(.data, ...)

### Arguments

`.data` | a Ranges object to reduce
`...` | Name-value pairs of summary functions.

### Value

a Ranges object with the

### Examples

    set.seed(10)
    df <- data.frame(start = sample(1:10),
                     width = 5,
                     seqnames = "seq1",
                     strand = sample(c("+", "-", "*"), 10, replace = TRUE),
                     gc = runif(10))

    rng <- as_granges(df)
    rng %>% reduce_ranges()
    rng %>% reduce_ranges(gc = mean(gc))
    rng %>% reduce_ranges_directed(gc = mean(gc))

    x <- data.frame(start = c(11:13, 2, 7:6),
                   width=3,
                   id=sample(letters[1:3], 6, replace = TRUE),
                   score= sample(1:6))
    x <- as_iranges(x)
    x %>% reduce_ranges()
    x %>% reduce_ranges(score = sum(score))
    x %>% group_by(id) %>% reduce_ranges(score = sum(score))

[Package plyranges version 1.12.1 Index]