gseaSignatures-class {phenoTest} | R Documentation

## Class "gseaSignatures" ES and EsSim container.

### Description

This object contains de ES (enrichment scores) and simulated ES that will be used in the GSEA (Gene Set Enrichment Analysis) process.

### Objects from the Class

Objects can be created by calls of the form `new("gseaSignatures", ...)`.

### Slots

`.Data`:

  Object of class `"list"` .

`es`:

  Object of class `"numeric"` Contains the observed enrichment scores. The ones that were compted from the data without permuting anything.

`es.sim`:

  Object of class `"numeric"` Contains the enrichment score that were obtained after permutations.

`signature`:

  Object of class `"numeric"` The subset of genes we are interested in.

### Extends

Class `"list"`, from data part. Class `"vector"`, by class "list", distance 2. Class `"AssayData"`, by class "list", distance 2.

### Methods

No methods defined with class "gseaSignatures" in the signature.

### Author(s)

Evarist Planet

### Examples

    showClass("gseaSignatures")

[Package phenoTest version 1.40.0 Index]