Package: phemd
Type: Package
Title: Phenotypic EMD for comparison of single-cell samples
Version: 1.8.0
Author: William S Chen
Maintainer: William S Chen <wil.yum.chen@gmail.com>
Description: Package for comparing and generating a low-dimensional embedding
  of multiple single-cell samples.
License: GPL-2
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5), monocle
Imports: SingleCellExperiment, RColorBrewer, igraph, transport, pracma,
        cluster, Rtsne, destiny, Seurat, RANN, ggplot2, maptree,
        pheatmap, scatterplot3d, VGAM, methods, grDevices, graphics,
        stats, utils, cowplot, S4Vectors, BiocGenerics,
        SummarizedExperiment, Biobase, phateR, reticulate
Config/reticulate: list( packages = list( list(package = "phate") ) )
Suggests: knitr
VignetteBuilder: knitr
biocViews: Clustering, ComparativeGenomics, Proteomics,
        Transcriptomics, Sequencing, DimensionReduction, SingleCell,
        DataRepresentation, Visualization, MultipleComparison
RoxygenNote: 7.0.2
git_url: https://git.bioconductor.org/packages/phemd
git_branch: RELEASE_3_13
git_last_commit: 6c77cb3
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-20 01:39:28 UTC; biocbuild
Built: R 4.1.0; ; 2021-05-20 09:25:06 UTC; windows
