convertSifToGmt {paxtoolsr} | R Documentation

## Convert SIF to GMT

### Description

Convert SIF to GMT

### Usage

    convertSifToGmt(sif, name = "gmt", returnSmallMolecules = FALSE)

### Arguments

`sif` | a data.frame representing a SIF (Simple Interaction Format)
`name` | the name of the gene set
`returnSmallMolecules` | a boolean whether to return genes or small molecules in the gene set

### Value

a list with one entry being a vector

### Examples

    sif <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr"))
    gmt <- convertSifToGmt(sif)

[Package paxtoolsr version 1.26.0 Index]