fetch {paxtoolsr} | R Documentation

## Fetch a set of IDs from a BioPAX OWL file

### Description

This function will create a subsetted object with specified URIs.

### Usage

    fetch(inputFile, outputFile = NULL, idList)

### Arguments

`inputFile` | a string of the name of the input BioPAX OWL file
`outputFile` | a string with the name of the output BioPAX OWL file
`idList` | a vector of IDs from the BioPAX OWL file

### Details

Only entities in the input BioPAX file will be used in the fetch. IDs used must be URIs for the entities of interest. Additional properties such as cross-references for fetched entities will be included in the output.

### Value

an XMLInternalDocument representing a BioPAX OWL file

### Examples

    outFile <- tempfile()
    ids <- c("http://identifiers.org/uniprot/P36894",
             "http://identifiers.org/uniprot/Q13873")
    results <- fetch(system.file("extdata", "REACT_12034-3.owl", package="paxtoolsr"),
                     outFile, ids)

[Package paxtoolsr version 1.26.0 Index]