be6507a92387d3d8fb0577e8f8932990 *CITATION
c9d8cf42800dd9a90a0cd35985bd541e *DESCRIPTION
c079a468186608a0a220ed6d0c392bea *INDEX
ba3a95121985902c6fba93c3e4943e1a *Meta/Rd.rds
91899a6def892dcb02a76adb9014bc80 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
2063c2cdd7e2e9426c58f0df12291492 *Meta/hsearch.rds
034e0bd71295e57610902b844efbc4ab *Meta/links.rds
9cade4029730357404d8f2ad1c7f1dc7 *Meta/nsInfo.rds
38ad77731ebd09e25c070346c45ea1b2 *Meta/package.rds
8385a7ac9324ff473fcc062e0f6b87b5 *Meta/vignette.rds
8e43a7b67bd78102f65cc3228a7609b8 *NAMESPACE
518cda6252195658876637b1b8c387c0 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/pRoloc
119fd3b46aa12eeab45cfdde41972494 *R/pRoloc.rdb
9b03d0f9c9e5793b0472c9619c3ab8a0 *R/pRoloc.rdx
8bc85bb6f519ea1b8ff1978681f7ac4f *data/andy2011params.rda
e16877746e340f64d615295176cb7bbd *data/dunkley2006params.rda
4549fd2d12458888be94339697f4d08a *doc/index.html
7eaf46d6e2a9684f6f6b185a9e4f74a6 *doc/v01-pRoloc-tutorial.R
a603e4892810eaf526dcc1053d1ceadc *doc/v01-pRoloc-tutorial.Rmd
7ad3c3c6498183c8fcce50696b54f545 *doc/v01-pRoloc-tutorial.html
1d0a6224d4b669735c4057cfb2cbc75c *doc/v02-pRoloc-ml.R
41012799ba56d380c9ad998d1ed86b76 *doc/v02-pRoloc-ml.Rmd
d4541ae9391d5614640095f3c8951be7 *doc/v02-pRoloc-ml.html
000d13fbd34498b6a899487dfa5e39a7 *doc/v03-pRoloc-bayesian.R
63e84019db8398a32041dcbf116fe031 *doc/v03-pRoloc-bayesian.Rmd
2deac37f8e0ddf62229649a928a4e595 *doc/v03-pRoloc-bayesian.html
3408b8dd5a3cbab677d1f0e708c11b90 *doc/v04-pRoloc-goannotations.R
e98dbf061ea8ba2742d144444eec506e *doc/v04-pRoloc-goannotations.Rmd
14db590735cc27de0659a7c866dd0b62 *doc/v04-pRoloc-goannotations.html
254038705eaf0eab2809e3924cec9a52 *doc/v05-pRoloc-transfer-learning.R
931c82e51f298424179aedb8e32d187a *doc/v05-pRoloc-transfer-learning.Rmd
79d6fc13c052ecb55303808b1b03db6e *doc/v05-pRoloc-transfer-learning.html
a5d08ec2a5e088add5f5c0764aaeae20 *extdata/dunkley2006pdunittest1.rda
3c25d49258d74427e5bce8a7c6c9c973 *extdata/dunkley2006pdunittest2.rda
c1e55275903bcbddfb7b81b35342978a *extdata/dunkley2006pdunittest_20140408.rda
367074e0888ee9628c20d4632b8e96e1 *extdata/marker_atha.rds
18d53e52ea6db4b81acd9617e95f87ab *extdata/marker_dmel.rds
bd3510c3063d2ea0f2277d2eb6586827 *extdata/marker_ggal.rds
936edc99e95331ae22ba372d52277da5 *extdata/marker_hsap.rds
96af76405d2045bda5b8a3fab8bfd976 *extdata/marker_mmus.rds
4236dd0a341f6dddd32722647466d922 *extdata/marker_scer_sgd.rds
2921afad24511e414412e2873cbfd1aa *extdata/marker_scer_uniprot.rds
8d49a1b05cde03398aafbb4894d26840 *extdata/mil.rds
bed5f896b39e01c1a0b2019135630822 *extdata/params.rda
d0a19c03fda86cc058f924b0f44fb6e7 *extdata/params2.rda
c3c0af1f91c653be6e536d96336479ff *extdata/pdres.rda
c5f04687d9d1f7a61104d2eff46c4edb *extdoc/mcmc.Rmd
64614b78b27ee52fc9e2839e9efd8c38 *extdoc/mcmc.md
5dc77813ff7164e70f81bce5db0a5781 *figs/plot2D-hexbin.png
04783d99a253ac699dff2181ac099f07 *figs/plot2D-lda.png
f7ce702e90f975407dc80c88e267afce *figs/plot2D-null-black.png
a50d048de1fca9d3e0e23e7d660815b0 *figs/plot2D-null-cex.png
162db61cf877b1da69835d12d571e963 *figs/plot2D-null-pch-black.png
5ab655c4578b961d235a236aeebc9abc *figs/plot2D-null-pch.png
803ab03012e9d833ce83a2cf1b6c492f *figs/plot2D-null.png
70384b7cbc69329b3995a966b62e682a *figs/plot2D-scree.png
b482de5728207f5baae22402b72ecdcd *figs/plot2D.png
c04d77c8ab8d88aa91f3029c2cbdd168 *help/AnIndex
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/AnnotationParams-class.html
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/AnnotationParams.html
e670d0e4d2e88ab49323d6748fd3a25b *help/ClustDist-class.html
cff92cb56067ecb193fc771b2d354436 *help/ClustDist.html
66c359507db4708faecc7fdd307c5457 *help/ClustDistList-class.html
66c359507db4708faecc7fdd307c5457 *help/ClustDistList.html
1f1327251e69e689d40c49f4208111cd *help/GenRegRes-class.html
1f1327251e69e689d40c49f4208111cd *help/GenRegRes.html
c46a30d752d59b3de9ce926cca282ee4 *help/MAPParams-class.html
c46a30d752d59b3de9ce926cca282ee4 *help/MAPParams.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCChain-class.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCChain.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCChains-class.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCChains.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCParams-class.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCParams.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCSummary-class..html
59e7e1d11511cb731aa7f96048704984 *help/MCMCSummary-class.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCSummary.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MLearn,formula,MSnSet,clusteringSchema,missing-method.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MLearn,formula,MSnSet,learnerSchema,numeric-method.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MLearn,formula,MSnSet,learnerSchema,xvalSpec-method.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MLearn-methods.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MLearnMSnSet.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MSnSetMLean.html
2fa8a73100a96c397cb83c60d1aca741 *help/MartInstance-class.html
2fa8a73100a96c397cb83c60d1aca741 *help/MartInstance.html
2fa8a73100a96c397cb83c60d1aca741 *help/MartInstanceList-class.html
2fa8a73100a96c397cb83c60d1aca741 *help/MartInstanceList.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/QSep-class.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/QSep.html
874b7185fe6b719f78d8f41764cd7cb7 *help/SpatProtVis-class.html
874b7185fe6b719f78d8f41764cd7cb7 *help/SpatProtVis.html
1f1327251e69e689d40c49f4208111cd *help/ThetaRegRes-class.html
1f1327251e69e689d40c49f4208111cd *help/ThetaRegRes.html
66c359507db4708faecc7fdd307c5457 *help/[,ClustDistList,ANY,ANY,ANY-method.html
66c359507db4708faecc7fdd307c5457 *help/[,ClustDistList,ANY,missing,missing-method.html
59e7e1d11511cb731aa7f96048704984 *help/[,MCMCChains,ANY,ANY,ANY-method.html
59e7e1d11511cb731aa7f96048704984 *help/[,MCMCParams,ANY,ANY,ANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/[,MartInstanceList,ANY,ANY,ANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/[,MartInstanceList,ANY,ANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/[,MartInstanceList-method.html
66c359507db4708faecc7fdd307c5457 *help/[[,ClustDistList,ANY,ANY-method.html
66c359507db4708faecc7fdd307c5457 *help/[[,ClustDistList,ANY,missing-method.html
59e7e1d11511cb731aa7f96048704984 *help/[[,MCMCChains,ANY,ANY-method.html
59e7e1d11511cb731aa7f96048704984 *help/[[,MCMCParams,ANY,ANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/[[,MartInstanceList,ANY,ANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/[[,MartInstanceList-method.html
48cdc251b5e53db9cc5b14091ef34c70 *help/addGoAnnotations.html
ad052578ee494030bf318afd6a2f9ae5 *help/addLegend.html
44cfee34e0ca172625aaeecd56fcbb9f *help/addMarkers.html
e9c0f9dd98da582b9d28b8ba233aa2be *help/aliases.rds
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/andy2011params.html
2fa8a73100a96c397cb83c60d1aca741 *help/as.data.frame.MartInstance.html
2fa8a73100a96c397cb83c60d1aca741 *help/as.data.frame.MartInstanceList.html
59e7e1d11511cb731aa7f96048704984 *help/chains.html
b8cb65d0ce22ec2291d33a7d654010a6 *help/checkFeatureNamesOverlap.html
100b992f15fc6fbb44b524258226a856 *help/checkFvarOverlap.html
99709c875c27ef444fac004b932bfe7a *help/chi2,matrix,matrix-method.html
99709c875c27ef444fac004b932bfe7a *help/chi2,matrix,numeric-method.html
99709c875c27ef444fac004b932bfe7a *help/chi2,numeric,matrix-method.html
99709c875c27ef444fac004b932bfe7a *help/chi2,numeric,numeric-method.html
99709c875c27ef444fac004b932bfe7a *help/chi2-methods.html
99709c875c27ef444fac004b932bfe7a *help/chi2.html
d41d8cd98f00b204e9800998ecf8427e *help/class
3927de044b0a70c33f63a263dbf19746 *help/classWeights.html
84908f9b82760800d06657a4f1430ffb *help/col1.html
84908f9b82760800d06657a4f1430ffb *help/col2.html
1f1327251e69e689d40c49f4208111cd *help/combineThetaRegRes.html
84908f9b82760800d06657a4f1430ffb *help/data1.html
84908f9b82760800d06657a4f1430ffb *help/data2.html
dac9507fbdb50dc974595cda71e1ea15 *help/defunct.html
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/dunkley2006params.html
b6ede3079441383ff84161dd9b45b06b *help/empPvalues.html
1f1327251e69e689d40c49f4208111cd *help/f1Count,GenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/f1Count,ThetaRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/f1Count.html
8ef84db0b28fda2c13e7a1fbf3d17dbf *help/fDataToUnknown.html
1f1327251e69e689d40c49f4208111cd *help/favourPrimary.html
2fa8a73100a96c397cb83c60d1aca741 *help/filterAttrs.html
3a6b7989f3b8237693b58c38cc3aff8d *help/filterBinMSnSet.html
f3aa411fdd2a9cc57188dd39da48484c *help/filterMaxMarkers.html
d73b0c706722e0545f52a97e49937bb9 *help/filterMinMarkers.html
73f0c3891d69e392f810a4ee80fe7e3a *help/filterZeroCols.html
73f0c3891d69e392f810a4ee80fe7e3a *help/filterZeroRows.html
483688731e5805668850d0b0d4af9704 *help/flipGoTermId.html
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/getAnnotationParams.html
1f1327251e69e689d40c49f4208111cd *help/getF1Scores,GenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getF1Scores,ThetaRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getF1Scores.html
2fa8a73100a96c397cb83c60d1aca741 *help/getFilterList.html
3f8cb9e3e28a0dce87196a715aacfe37 *help/getGOEvidenceCodes.html
e0a09c2148d6ae8f3518734b56b27017 *help/getGOFromFeatures.html
a210da68051157d785726156cfe94319 *help/getLisacol.html
feb4868ca2c8ea64d89b77b829015cd3 *help/getMarkerClasses.html
8ffb56ffad805d16ad095e3d5b212f61 *help/getMarkers.html
2fa8a73100a96c397cb83c60d1aca741 *help/getMartInstanceList.html
2fa8a73100a96c397cb83c60d1aca741 *help/getMartTab.html
3febc430ca3a71394cfbb2bb5d10ce3c *help/getNormDist.html
a210da68051157d785726156cfe94319 *help/getOldcol.html
e83f217b6d871efcce3455535940f160 *help/getParams,ClustRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getParams,GenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getParams,ThetaRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getParams.html
f4c0f485db3d3d001f58755887a3ae30 *help/getPredictions.html
1f1327251e69e689d40c49f4208111cd *help/getRegularisedParams,GenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getRegularisedParams.html
1f1327251e69e689d40c49f4208111cd *help/getRegularizedParams,GenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getRegularizedParams.html
1f1327251e69e689d40c49f4208111cd *help/getSeed,GenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getSeed.html
a210da68051157d785726156cfe94319 *help/getStockcol.html
a210da68051157d785726156cfe94319 *help/getStockpch.html
a210da68051157d785726156cfe94319 *help/getUnknowncol.html
a210da68051157d785726156cfe94319 *help/getUnknownpch.html
1f1327251e69e689d40c49f4208111cd *help/getWarnings,GenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getWarnings.html
d234078c5bf3e41a327a5929d78c1bd1 *help/geweke_test.html
483688731e5805668850d0b0d4af9704 *help/goIdToTerm.html
483688731e5805668850d0b0d4af9704 *help/goTermToId.html
b2c39028fd222fdf6d0d4b7c0f86dc80 *help/highlightOnPlot.html
b2c39028fd222fdf6d0d4b7c0f86dc80 *help/highlightOnPlot3D.html
582d9025e03e57de63ec6bac55680586 *help/isMrkMat.html
582d9025e03e57de63ec6bac55680586 *help/isMrkVec.html
d35288010ac000b603fca1fa4d9d1c45 *help/knnClassification.html
56e4d5151fd950144f03ea19ae8e6f9e *help/knnOptimisation.html
56e4d5151fd950144f03ea19ae8e6f9e *help/knnOptimization.html
d35288010ac000b603fca1fa4d9d1c45 *help/knnPrediction.html
56e4d5151fd950144f03ea19ae8e6f9e *help/knnRegularisation.html
d909657608eaeffad3a2d894648dfeca *help/knntlClassification.html
a5a54df560f63a1d6d0af0fbce85e59d *help/knntlOptimisation.html
be05e27c713ff365046941bea3c81657 *help/ksvmClassification.html
32b2f2f18998a6bf55e694fd308e2ff5 *help/ksvmOptimisation.html
32b2f2f18998a6bf55e694fd308e2ff5 *help/ksvmOptimization.html
be05e27c713ff365046941bea3c81657 *help/ksvmPrediction.html
32b2f2f18998a6bf55e694fd308e2ff5 *help/ksvmRegularisation.html
66c359507db4708faecc7fdd307c5457 *help/lapply,ClustDistList-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/lapply,MartInstanceList,ANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/lapply,MartInstanceList-method.html
66c359507db4708faecc7fdd307c5457 *help/length,ClustDistList-method.html
59e7e1d11511cb731aa7f96048704984 *help/length,MCMCChains-method.html
59e7e1d11511cb731aa7f96048704984 *help/length,MCMCParams-method.html
e83f217b6d871efcce3455535940f160 *help/levelPlot,ClustRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/levelPlot,GenRegRes-method.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/levelPlot,QSep-method.html
1f1327251e69e689d40c49f4208111cd *help/levelPlot.html
c46a30d752d59b3de9ce926cca282ee4 *help/logPosteriors.html
076ec48448aab46566219f5d94463e3d *help/makeGoSet.html
07bee8f9205313e093cea84e7b8c86f6 *help/markerMSnSet.html
582d9025e03e57de63ec6bac55680586 *help/markers.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc-helpers.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_burn_chains.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_get_meanComponent.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_get_meanoutliersProb.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_get_outliers.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_pool_chains.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_thin_chains.html
dac9507fbdb50dc974595cda71e1ea15 *help/minClassScore.html
dad2717297fd0bbd0bc93c6af20ecc8d *help/minMarkers.html
22fc2a33cd9a8618d80513e45fa6d59f *help/mixing_posterior_check.html
aca3365fb1735cccb18954b10e583796 *help/move2Ds.html
a835f996c145a01d6b574437dd35cdf1 *help/mrkConsProfiles.html
582d9025e03e57de63ec6bac55680586 *help/mrkEncoding.html
36a0791a09f65dd1c2fc8cfae6db350e *help/mrkHClust.html
582d9025e03e57de63ec6bac55680586 *help/mrkMatAndVec.html
582d9025e03e57de63ec6bac55680586 *help/mrkMatToVec.html
582d9025e03e57de63ec6bac55680586 *help/mrkVecToMat.html
2fa8a73100a96c397cb83c60d1aca741 *help/nDatasets.html
66c359507db4708faecc7fdd307c5457 *help/names,ClustDistList-method.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/names,QSep-method.html
ed662db696d7e94e9065f2c4c5512654 *help/nbClassification.html
a10ddad9d00ba8f1f2c133a4ec563bdf *help/nbOptimisation.html
a10ddad9d00ba8f1f2c133a4ec563bdf *help/nbOptimization.html
ed662db696d7e94e9065f2c4c5512654 *help/nbPrediction.html
a10ddad9d00ba8f1f2c133a4ec563bdf *help/nbRegularisation.html
e875912da3bcb93c2fd2a1dce77ee0ce *help/nicheMeans2D.html
6a3f393df53284e4170c3de0a1336788 *help/nndist,MSnSet,missing-method.html
6a3f393df53284e4170c3de0a1336788 *help/nndist,matrix,matrix-method.html
6a3f393df53284e4170c3de0a1336788 *help/nndist,matrix,missing-method.html
6a3f393df53284e4170c3de0a1336788 *help/nndist-methods.html
6a3f393df53284e4170c3de0a1336788 *help/nndist.html
13cbf27f57887d9c59ce5a58f95b0d91 *help/nnetClassification.html
aa9b682b07dd1f440eb563d3a705109f *help/nnetOptimisation.html
aa9b682b07dd1f440eb563d3a705109f *help/nnetOptimization.html
13cbf27f57887d9c59ce5a58f95b0d91 *help/nnetPrediction.html
aa9b682b07dd1f440eb563d3a705109f *help/nnetRegularisation.html
6fa6ec0b8efc776e320b5841d63107c9 *help/orderGoAnnotations.html
2bf4a08741b6a4e53a8ef6c3988f20fd *help/orgQuants.html
dac9507fbdb50dc974595cda71e1ea15 *help/pRoloc-defunct.html
dac9507fbdb50dc974595cda71e1ea15 *help/pRoloc-deprecated.html
e6021eee5f7ce0dfba2073dc81924e83 *help/pRoloc.rdb
ca657946dac0b182dde661763fb77150 *help/pRoloc.rdx
451cf8d9e949d9a90ce370953dff1222 *help/pRolocmarkers.html
f4ea14a97348c5a66ac88cddf4f46f94 *help/paths.rds
e3005396d52463256cfc2578c6bb2e77 *help/perTurboClassification.html
726e5436883f9616dc7e798da7459052 *help/perTurboOptimisation.html
726e5436883f9616dc7e798da7459052 *help/perTurboOptimization.html
f04bfa3f868a9c30026c329b9e479759 *help/phenoDisco.html
e670d0e4d2e88ab49323d6748fd3a25b *help/plot,ClustDist,MSnSet-method.html
66c359507db4708faecc7fdd307c5457 *help/plot,ClustDistList,missing-method.html
e83f217b6d871efcce3455535940f160 *help/plot,ClustRegRes,missing-method.html
1f1327251e69e689d40c49f4208111cd *help/plot,GenRegRes,missing-method.html
d234078c5bf3e41a327a5929d78c1bd1 *help/plot,MCMCParams,character-method.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/plot,QSep,missing-method.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/plot,QSep-method.html
874b7185fe6b719f78d8f41764cd7cb7 *help/plot,SpatProtVis,missing-method.html
1f1327251e69e689d40c49f4208111cd *help/plot,ThetaRegRes,missing-method.html
b4c87856e7ea5f07f03f55130b8ba31a *help/plot2D.html
b4c87856e7ea5f07f03f55130b8ba31a *help/plot2Dmethods.html
84908f9b82760800d06657a4f1430ffb *help/plot2Ds.html
b4c87856e7ea5f07f03f55130b8ba31a *help/plot3D,MSnSet-method.html
b8c108f0513ca921d4bf61d0d2f1713f *help/plotConsProfiles.html
94060ad8e7a9c7ad7d53a49987f0dcf1 *help/plotDist.html
b334ce53f05a66c7e96e373020ec9336 *help/plotEllipse.html
52434bb7fcdd4f2ac1320606c7f93d3b *help/plsdaClassification.html
7349ea338a90f0169b7ea0904baa4913 *help/plsdaOptimisation.html
7349ea338a90f0169b7ea0904baa4913 *help/plsdaOptimization.html
52434bb7fcdd4f2ac1320606c7f93d3b *help/plsdaPrediction.html
7349ea338a90f0169b7ea0904baa4913 *help/plsdaRegularisation.html
483688731e5805668850d0b0d4af9704 *help/prettyGoTermId.html
6fb96bbc1a1c2668e32ac9c6ce629d36 *help/rfClassification.html
24d30958811c85822d06011e3d6f0db3 *help/rfOptimisation.html
24d30958811c85822d06011e3d6f0db3 *help/rfOptimization.html
6fb96bbc1a1c2668e32ac9c6ce629d36 *help/rfPrediction.html
24d30958811c85822d06011e3d6f0db3 *help/rfRegularisation.html
8143982e98c19313ef3943046da4cb2e *help/sampleMSnSet.html
66c359507db4708faecc7fdd307c5457 *help/sapply,ClustDistList-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/sapply,MartInstanceList,ANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/sapply,MartInstanceList-method.html
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/setAnnotationParams.html
a210da68051157d785726156cfe94319 *help/setLisacol.html
a210da68051157d785726156cfe94319 *help/setOldcol.html
a210da68051157d785726156cfe94319 *help/setStockcol.html
a210da68051157d785726156cfe94319 *help/setStockpch.html
a210da68051157d785726156cfe94319 *help/setUnknowncol.html
a210da68051157d785726156cfe94319 *help/setUnknownpch.html
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/show,AnnotationParams-method.html
e670d0e4d2e88ab49323d6748fd3a25b *help/show,ClustDist-method.html
66c359507db4708faecc7fdd307c5457 *help/show,ClustDistList-method.html
e83f217b6d871efcce3455535940f160 *help/show,ClustRegRes-method.html
59e7e1d11511cb731aa7f96048704984 *help/show,ComponentParam-method.html
1f1327251e69e689d40c49f4208111cd *help/show,GenRegRes-method.html
c46a30d752d59b3de9ce926cca282ee4 *help/show,MAPParams-method.html
59e7e1d11511cb731aa7f96048704984 *help/show,MCMCChain-method.html
59e7e1d11511cb731aa7f96048704984 *help/show,MCMCChains-method.html
59e7e1d11511cb731aa7f96048704984 *help/show,MCMCParams-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/show,MartInstance-method.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/show,QSep-method.html
874b7185fe6b719f78d8f41764cd7cb7 *help/show,SpatProtVis-method.html
1f1327251e69e689d40c49f4208111cd *help/show,ThetaRegRes-method.html
3f8cb9e3e28a0dce87196a715aacfe37 *help/showGOEvidenceCodes.html
582d9025e03e57de63ec6bac55680586 *help/showMrkMat.html
6afc98bffcd9609fd494702b2aadaeef *help/spatial2D.html
ddc018700291ae383d864751a2171b95 *help/subsetMarkers.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/summary,QSep-method.html
6d690544a4287554424521e6e943f3b9 *help/svmClassification.html
3305e2e8fac0eb59b85ce898cde9b2fc *help/svmOptimisation.html
3305e2e8fac0eb59b85ce898cde9b2fc *help/svmOptimization.html
6d690544a4287554424521e6e943f3b9 *help/svmPrediction.html
3305e2e8fac0eb59b85ce898cde9b2fc *help/svmRegularisation.html
c46a30d752d59b3de9ce926cca282ee4 *help/tagm-map.html
b55afb0cd83270fc57d70dcf8b9ce859 *help/tagm-mcmc.html
c46a30d752d59b3de9ce926cca282ee4 *help/tagmMapPredict.html
c46a30d752d59b3de9ce926cca282ee4 *help/tagmMapTrain.html
b55afb0cd83270fc57d70dcf8b9ce859 *help/tagmMcmcPredict.html
b55afb0cd83270fc57d70dcf8b9ce859 *help/tagmMcmcProcess.html
b55afb0cd83270fc57d70dcf8b9ce859 *help/tagmMcmcTrain.html
b55afb0cd83270fc57d70dcf8b9ce859 *help/tagmPredict.html
e7d12a40c45650845eb0c44593044162 *help/testMSnSet.html
fb9da99910bb482faa7bec836d46f7d9 *help/testMarkers.html
3ed2ccd5c3680e33596d0bacf98ed482 *help/thetas.html
e83f217b6d871efcce3455535940f160 *help/undocumented.html
07bee8f9205313e093cea84e7b8c86f6 *help/unknownMSnSet.html
54e3110547edce806cff2ddb019acf26 *help/zerosInBinMSnSet.html
813162f8f49cbe4f2ec067dde9bd1b39 *html/00Index.html
eab125b074e94b1ab316d3480c7a1b23 *html/AnnotationParams-class.html
fb88ef2276bef7abebcb0af050096bc2 *html/ClustDist-class.html
1eba1bb987949da0bb59cb620bf74f89 *html/ClustDistList-class.html
41b26f1282a2ae0b584718226f89d657 *html/GenRegRes-class.html
38cb21604bb23182cd1f0b6d432b33cd *html/MCMCParams.html
9fe0dac08607f7736eeed309148bd957 *html/MLearn-methods.html
b5a20c32a76d04c579fc40b597efc44f *html/MartInstance-class.html
51b26bc1024f5d1303a97b9486e2dbdb *html/QSep-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a628d7d14c2570301e7b2efe06a49dc3 *html/SpatProtVis-class.html
8a312731b4b4680cafa717346cf7927c *html/addGoAnnotations.html
1e658e76d15bf2a81ebe948623a99c38 *html/addLegend.html
d38488f8eddcba399ae74a7a4d3ba909 *html/addMarkers.html
004d970de77039beebe3bda8190b70d1 *html/checkFeatureNamesOverlap.html
d47ac9647a5514caa492024c0ff2dabf *html/checkFvarOverlap.html
0f622273a10ac74d10d223ebda2e732d *html/chi2-methods.html
70989eb16bdada3f13d51316d842d6bf *html/classWeights.html
74f2522d903df31f33bb32f75bf3882f *html/clustDist.html
98ca2e901dd72cbfc33abd530e5697ae *html/defunct.html
5d308c6877e48703c07a5a7a86297319 *html/empPvalues.html
847d1be5d8d660df398f3fff5ee31380 *html/fDataToUnknown.html
105fb123304131f459110a7fdb794697 *html/filterBinMSnSet.html
352269746e763b4d65089c5f3071b773 *html/filterMaxMarkers.html
1b7cf0ee0a19a6379ededb71df97eac8 *html/filterMinMarkers.html
7f961331c2f7479c44843a92b21a7cc9 *html/filterZeroCols.html
1c1a98483513b3e866eae6f89ce1bd88 *html/getGOFromFeatures.html
1b3721f4a5129f4aaf396ad49e0f6566 *html/getMarkerClasses.html
d5b82e0751d16575821a976f2191a0c1 *html/getMarkers.html
8569a3f8cf03a0b5a047e6adf066144f *html/getNormDist.html
b92c651a764cd23e4236d1fea445156b *html/getPredictions.html
1bf0ccfee3bbe026925898ef44a1f872 *html/getStockcol.html
0ad33b793f4ef35a904a2d5e04920e61 *html/goIdToTerm.html
97ec4b524087e028939d5db6dee9db62 *html/highlightOnPlot.html
7227124a1960ac32bee7ea66df413a6a *html/knnClassification.html
9ae2c9e377ca2e8c27d904fa6271bc62 *html/knnOptimisation.html
19f46a687e886d34e08e0a4adbfa955c *html/knntlClassification.html
283c601bd107e4843fdb1937c17ec2b7 *html/knntlOptimisation.html
baff7841082a48d4b84f3c4137313761 *html/ksvmClassification.html
6520f3ef30c08f962da0955b0f9964d6 *html/ksvmOptimisation.html
69ec186f5634fbc75b119b896815382a *html/makeGoSet.html
140ccdcf2afd95980d30b90101d6df7f *html/markerMSnSet.html
1c0e12f1064b480eb6257ca1e83805f0 *html/markers.html
733acb5a0d11a1b38df0d6c0c8a4eba3 *html/mcmc-helpers.html
eda7a53121515efd1f10d013554a6031 *html/minMarkers.html
a03030c80902aeff4f94c94ec4569616 *html/mixing_posterior_check.html
bae2d799141aa8158a37662cb3870293 *html/move2Ds.html
94a7f0b828c38b62663bf225813ad15f *html/mrkConsProfiles.html
a7c0292df35917c7436cff9e20bc5127 *html/mrkHClust.html
9c4d8b983fd413b8f02822056f5fa05b *html/nbClassification.html
b80e0489dcc350f48e61a04f00410610 *html/nbOptimisation.html
1f5224d34b1276ef9d21cc6852064704 *html/nicheMeans2D.html
55970d3a72a42211016cf4a0ef879239 *html/nndist-methods.html
002b37947e87d50e0184101d2f254556 *html/nnetClassification.html
59e0c1cee0c4cd20f5afa0a0ec3ed58b *html/nnetOptimisation.html
2207118cc4b2ff4da29cd8b2c7f124fb *html/orderGoAnnotations.html
8de16e968aaa743473b4c9a447f9e049 *html/orgQuants.html
c2706d49ee524af7cb0e09f794172bd7 *html/pRolocmarkers.html
52f63c3df806c7ae5abf9a7dff85ff45 *html/perTurboClassification.html
14c607fc5ac4f83912d93d7efbc67847 *html/perTurboOptimisation.html
8586591dcbfa51878a42c966fa90aaaa *html/phenoDisco.html
07cb10d85893cb3a3a8d3e0c142724d6 *html/plot2D.html
93023cf2e819ed0043451916cce5c81d *html/plot2Ds.html
d374a511283961e3e12a2970bd446140 *html/plotConsProfiles.html
88fd8c2a774fd3a13d20896147601ab7 *html/plotDist.html
8c8c7fd9f026c2fd0d8547c6feb4e9c1 *html/plotEllipse.html
c92fbe90aeebd7d011c7808f34363376 *html/plsdaClassification.html
4bc0e3979afd35190965f2885abfc3c7 *html/plsdaOptimisation.html
304dd5c4a1dcc02c682835f6dee9971f *html/rfClassification.html
934e3ff1153622dea4484e2d033c82f2 *html/rfOptimisation.html
db64453c0cef69435664b925725e4985 *html/sampleMSnSet.html
18cafd3d03e7feb720a7c73916c675bb *html/showGOEvidenceCodes.html
57aaec014b37e02cafbfa0467aa35db5 *html/spatial2D.html
04f0c60c1f6894019640661f91b149b1 *html/subsetMarkers.html
0713a7b1717b74221dc86d5753ee5de6 *html/svmClassification.html
0a4fe8f3d8396e821fa56e7b83d11070 *html/svmOptimisation.html
13b798ea7d268bded9114795f61ce089 *html/tagm-map.html
c1524b5193209187b5d7997907762f81 *html/tagm-mcmc.html
d4483cd77203e1b4475336fd10705972 *html/testMSnSet.html
0bd291c80af2a66295f18f5c465e3a5a *html/testMarkers.html
2fc3785b33f9424a72248ea0114e5404 *html/thetas.html
0bc7c26eedae9781129ef42df683ca1b *html/undocumented.html
118cd82f8d442678c9464d4587bd49ee *html/zerosInBinMSnSet.html
7dc89a0edf0ab0859a001b9e0888118a *libs/i386/pRoloc.dll
b258f36575699305acc02493eed37d18 *libs/x64/pRoloc.dll
342a22b2c9d100fc51eefb5b18a04430 *scripts/biomart.R
9dc7ccdb8f8ad7402fcd488b5380bef5 *scripts/dynamics.R
38c12310cdd154a67620262b5dc9f01c *scripts/test_pd.R
