cyclicSigset {ontoProc} | R Documentation

## as in Bakken et al. (2017 PMID 29322913) create gene signatures for k cell types, each of which fails to express all but one gene in a set of k genes

### Description

as in Bakken et al. (2017 PMID 29322913) create gene signatures for k cell types, each of which fails to express all but one gene in a set of k genes

### Usage

    cyclicSigset(
      idvec,
      conds = c("hasExp", "lacksExp"),
      tags = paste0("CL:X", 1:length(idvec))
    )

### Arguments

`idvec` | character vector of identifiers, must have names() set to identify cells bearing genes
`conds` | character(2) tokens used to indicate condition to which signature element contributes
`tags` | character vector of cell-type identifiers; for Cell Ontology use CL: as prefix, one element for each element of idvec

### Value

a long data.frame

### Examples

    sigels = c("CL:X01"="GRIK3", "CL:X02"="NTNG1", "CL:X03"="BAGE2",
            "CL:X04"="MC4R", "CL:X05"="PAX6", "CL:X06"="TSPAN12", "CL:X07"="hSHISA8",
         "CL:X08"="SNCG", "CL:X09"="ARHGEF28", "CL:X10"="EGF")
    sigdf = cyclicSigset(sigels)
    head(sigdf)

[Package ontoProc version 1.14.0 Index]