fqName {ngsReports} | R Documentation

## Return the Underlying Fastq File Names from FastqcData* Objects

### Description

Return the Underlying Fastq File Names from FastqcData* Objects

### Usage

    fqName(object)

    ## S4 method for signature 'ANY'
    fqName(object)

    ## S4 method for signature 'FastqcData'
    fqName(object)

    ## S4 method for signature 'FastqcDataList'
    fqName(object)

    fqName(object) <- value

    ## S4 replacement method for signature 'FastqcData'
    fqName(object) <- value

    ## S4 replacement method for signature 'FastqcDataList'
    fqName(object) <- value

### Arguments

`object` | An object of class FastqcData or FastqcDataList
`value` | Replacement value for fqName

### Value

Returns the names of the Fastq files the FastQC report was generated from, without any preceding directories.

### Examples

    # Get the files included with the package
    packageDir <- system.file("extdata", package = "ngsReports")
    fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE)

    # Load the FASTQC data as a FastqcDataList object
    fdl <- FastqcDataList(fl)
    fqName(fdl)

    nm <- paste0(letters[seq_along(fdl)], ".fq")
    fqName(fdl) <- nm
    fqName(fdl)

[Package ngsReports version 1.8.1 Index]