shapiro_screen {nethet} | R Documentation

## Filter "non-normal" genes

### Description

Filter "non-normal" genes

### Usage

    shapiro_screen(x1, x2, sign.level = 0.001)

### Arguments

`x1` | expression matrix (condition 1)
`x2` | expression matrix (condition 2)
`sign.level` | sign.level in Shapiro-Wilk tests (default: sign.level=0.001)

### Details

Discarding genes which have Shapiro-Wilk p-value (corrected for multiplicity) smaller than sign.level in either of the two conditions. We used sign.level=0.001 in the GGMGSA paper.

### Value

list consisting of

`x1.filt` | expression matrix (condition 1) after filtering
`x2.filt` | expression matrix (condition 2) after filtering

### Author(s)

n.stadler

[Package nethet version 1.24.0 Index]