filter,ncdfFlowList,filter-method {ncdfFlow} | R Documentation

## Accessors compatible with those for `flowSet`

### Description

Accessors compatible with those for `flowSet`

### Usage

    ## S4 method for signature 'ncdfFlowList,filter'
    filter(
      x,
      filter,
      method = "missing",
      sides = "missing",
      circular = "missing",
      init = "missing"
    )

    ## S4 method for signature 'ncdfFlowList,filterList'
    filter(
      x,
      filter,
      method = "missing",
      sides = "missing",
      circular = "missing",
      init = "missing"
    )

    ## S4 method for signature 'ncdfFlowList,list'
    filter(
      x,
      filter,
      method = "missing",
      sides = "missing",
      circular = "missing",
      init = "missing"
    )

    ## S4 method for signature 'ncdfFlowList'
    length(x)

    ## S4 method for signature 'ncdfFlowList'
    sampleNames(object)

    ## S4 method for signature 'ncdfFlowList'
    phenoData(object)

    ## S4 method for signature 'ncdfFlowList'
    pData(object)

    ## S4 replacement method for signature 'ncdfFlowList,data.frame'
    pData(object) <- value

    ## S4 method for signature 'ncdfFlowList'
    colnames(x)

    ## S4 replacement method for signature 'ncdfFlowList'
    colnames(x) <- value

    ## S4 method for signature 'ncdfFlowList'
    markernames(object)

    ## S4 replacement method for signature 'ncdfFlowList'
    markernames(object) <- value

    ## S4 method for signature 'ncdfFlowSet,ANY'
    compensate(x, spillover)

    ## S4 method for signature 'flowSet,data.frame'
    compensate(x, spillover)

    ## S4 method for signature 'ncdfFlowSet,list'
    compensate(x, spillover)

    ## S4 method for signature 'ncdfFlowSet'
    transform(`_data`, translist, ...)

    ## S4 replacement method for signature 'ncdfFlowSet,ANY'
    sampleNames(object) <- value

    ## S4 replacement method for signature 'ncdfFlowSet'
    colnames(x) <- value

    ## S4 method for signature 'ncdfFlowSet,list'
    keyword(object, keyword)

    ## S4 replacement method for signature 'ncdfFlowSet,list'
    keyword(object) <- value

### Arguments

`x` | `ncdfFlowSet`
`filter` | `filter` to be applied
`method` | `missing` not used
`sides` | `missing` not used
`circular` | `missing` not used
`init` | `missing` not used
`object` | `ncdfFlowList`
`value` | `character` vector
`spillover` | spillover matrix
`_data` | `ncdfFlowSet`
`translist` | a 'transformList' object or a list of 'transformList' objects
`...` | other arguments
`keyword` | list

[Package ncdfFlow version 2.38.0 Index]