add_flank_to_variants {musicatk} | R Documentation

## Uses a genome object to find context and add it to the variant table

### Description

Uses a genome object to find context and add it to the variant table

### Usage

    add_flank_to_variants(
      musica,
      g,
      flank_start,
      flank_end,
      build_table = TRUE,
      overwrite = FALSE
    )

### Arguments

`musica` | Input samples
`g` | A BSgenome object indicating which genome reference the variants and their coordinates were derived from.
`flank_start` | Start of flank area to add, can be positive or negative
`flank_end` | End of flank area to add, can be positive or negative
`build_table` | Automatically build a table using the annotation and add
`overwrite` | Overwrite existing count table

### Value

None it to the musica

### Examples

    data(musica_sbs96_tiny)
    g <- select_genome("19")
    add_flank_to_variants(musica_sbs96_tiny, g, 1, 2)
    add_flank_to_variants(musica_sbs96_tiny, g, -2, -1)

[Package musicatk version 1.2.0 Index]