extract_variants_from_maf_file {musicatk} | R Documentation

## Extracts variants from a maf file

### Description

Add Description - Aaron

### Usage

    extract_variants_from_maf_file(maf_file, extra_fields = NULL)

### Arguments

`maf_file` | Location of maf file
`extra_fields` | Optionally extract additional columns from the object. Default `NULL`.

### Value

Returns a data.table of variants from a maf

### Examples

    maf_file <- system.file("extdata", "public_TCGA.LUSC.maf",
    package = "musicatk")
    maf <- extract_variants_from_maf_file(maf_file = maf_file)

[Package musicatk version 1.2.0 Index]