combine_predict_grid {musicatk} | R Documentation

## Combine prediction grid list into a result object. Exposure values are zero for samples in an annotation where that signature was not predicted

### Description

Combine prediction grid list into a result object. Exposure values are zero for samples in an annotation where that signature was not predicted

### Usage

    combine_predict_grid(grid_list, musica, table_name, signature_res)

### Arguments

`grid_list` | A list of result objects from the prediction grid to combine into a single result
`musica` | A `musica` object.
`table_name` | Table name used for prediction
`signature_res` | Signatures to automatically subset from for prediction

### Value

A result object combining all samples and signatures from a prediction grid. Samples have zero exposure value for signatures not found in that annotation type.

### Examples

    data(musica_annot)
    data(cosmic_v2_sigs)
    grid <- auto_predict_grid(musica_annot, "SBS96", cosmic_v2_sigs, "lda",
    "Tumor_Subtypes", combine_res = FALSE)
    combined <- combine_predict_grid(grid, musica_annot, "SBS96", cosmic_v2_sigs)
    plot_exposures(combined, group_by = "annotation",
    annotation="Tumor_Subtypes")

[Package musicatk version 1.2.0 Index]