generate_result_grid {musicatk} | R Documentation

## Generate result_grid from musica based on annotation and range of k

### Description

Generate result_grid from musica based on annotation and range of k

### Usage

    generate_result_grid(
      musica,
      table_name,
      algorithm = "lda",
      annotation = NA,
      k_start,
      k_end,
      n_start = 1,
      seed = NULL,
      par_cores = FALSE,
      verbose = FALSE
    )

### Arguments

`musica` | A `musica` object.
`table_name` | Name of table used for signature discovery
`algorithm` | Algorithm for signature discovery
`annotation` | Sample annotation to split results into
`k_start` | Lower range of number of signatures for discovery
`k_end` | Upper range of number of signatures for discovery
`n_start` | Number of times to discover signatures and compare based on posterior loglikihood
`seed` | Seed to use for reproducible results, set to null to disable
`par_cores` | Number of parallel cores to use (NMF only)
`verbose` | Whether to output loop iterations

### Value

A result object containing signatures and sample weights

### Examples

    data(musica_sbs96)
    grid <- generate_result_grid(musica_sbs96, "SBS96", "lda", k_start = 2,
    k_end = 5)

[Package musicatk version 1.2.0 Index]