importMatrix {motifStack} | R Documentation

## import motifs from local files

### Description

Import the motifs into pcm-class or pfm-class from files exported from Transfac, CisBP, and JASPAR.

### Usage

    importMatrix(
      filenames,
      format = c("auto", "pfm", "cm", "pcm", "meme", "transfac", "jaspar", "scpd", "cisbp",
        "psam"),
      to = c("auto", "pcm", "pfm", "pssm", "psam")
    )

### Arguments

`filenames` | filename to be imported.
`format` | file format
`to` | import to pcm-class or pfm-class

### Value

a list of object pcm-class or pfm-class

### Author(s)

Jianhong Ou

### Examples

      path <- system.file("extdata", package = "motifStack")
      importMatrix(dir(path, "*.pcm", full.names = TRUE))

[Package motifStack version 1.36.1 Index]