runModels {mirTarRnaSeq} | R Documentation

## runModels runs miRNA mrna model model for various miRNA-mRNA data distributions

### Description

This function defines the boundaries of mRNA vs miRNAs of interest to be analysed by the runModels function

### Usage

    runModels(
      combination,
      select_mRNA,
      select_miRNA,
      mode = NULL,
      family = glm_poisson(),
      scale = 1,
      cutoff = 0.05,
      all_coeff = NULL
    )

### Arguments

`combination` | the combined file for mRNA and selected miRNAs output of combiner function
`select_mRNA` | the output of gene_variant function.
`select_miRNA` | The vector of miRNA/s to be investigated.
`mode` | the mode of analysis if more than one miRNA is being investigated multivariate "multi" or co-variate/interaction analysis "inter" is being used
`family` | gaussian or poisson
`scale` | factor to scale input data (for genes) by, prior to rounding and model fitting. (`scale` must be greater than zero).
`cutoff` | p-value cut off to call significance
`all_coeff` | if true only models with all negative coefficients will be selected if false at least one

### Value

A list of p-vlaues, annova, and significance for each gene and the miRNA/s of interest

### Examples

    x <- runModels(Combine, geneVariant, "ebv-mir-bart9-5p")

[Package mirTarRnaSeq version 1.0.0 Index]