pathways2pdf {mirIntegrator} | R Documentation

## Export augmented pathways to pdf

### Description

This function creates a pdf file with plottings of a list of augmented pathways.

### Usage

    pathways2pdf(original_pathways, augmented_pathways, pathway_names, file)

### Arguments

`original_pathways` | A list of graph::graphNEL objects where each of the nodes is named with '<gene_ID>'. Nodes of each graph::graphNEL represent the genes involved in the pathway and edges represent the biological interactions (activation or repression) among those genes (activation or repression).
`augmented_pathways` | A list of graph::graphNEL objects where each of the nodes is named with '<gene_ID>'. Nodes of each graph::graphNEL represent genes and miRNAs involved in the pathway and edges represent the biological interactions (activation or repression) among them.
`pathway_names` | A list of names of the pathways named by '<pathway_ID>'.
`file` | The name of the file where the plots will be saved.

### Value

A pdf file with the plottings of the augmented pathways.

### Author(s)

Diana Diaz <dmd at wayne dot edu>

### Examples

    data(augmented_pathways)
    data(kegg_pathways)
    data(names_pathways)
    #The following instruction writes a pfd with three pathways
    pathways2pdf(kegg_pathways[18:20],augmented_pathways[18:20],
                 names_pathways[18:20], "three_pathways.pdf")
    #The following instruction writes a pfd with all the pathways:
    #NOTE: It may take time.
    # pathways2pdf(kegg_pathways,augmented_pathways,
    #              names_pathways, "all_pathways.pdf")

[Package mirIntegrator version 1.22.0 Index]