core_heatmap {microbiome} | R Documentation

## Core Heatmap

### Description

Core heatmap.

### Usage

    core_heatmap(x, dets, cols, min.prev, taxa.order)

### Arguments

`x` | OTU matrix
`dets` | A vector or a scalar indicating the number of intervals in (0, log10(max(data))). The dets are calculated for relative abundancies.
`cols` | colours for the heatmap
`min.prev` | If minimum prevalence is set, then filter out those rows (taxa) and columns (dets) that never exceed this prevalence. This helps to zoom in on the actual core region of the heatmap.
`taxa.order` | Ordering of the taxa.

### Value

Used for its side effects

### Author(s)

Contact: Leo Lahti microbiome-admin@googlegroups.com

### References

A Salonen et al. The adult intestinal core microbiota is determined by analysis depth and health status. Clinical Microbiology and Infection 18(S4):16 20, 2012. To cite the microbiome R package, see citation('microbiome')

[Package microbiome version 1.14.0 Index]