.preprocess_estimatecc {methylCC} | R Documentation

## .preprocess_estimatecc

### Description

This function preprocesses the data before the `estimatecc()` function

### Usage

    .preprocess_estimatecc(object, verbose = TRUE,
      init_param_method = "random",
      celltype_specific_dmrs = celltype_specific_dmrs)

### Arguments

`object` | an object can be a `RGChannelSet`, `GenomicMethylSet` or `BSseq` object
`verbose` | TRUE/FALSE argument specifying if verbose messages should be returned or not. Default is TRUE.
`init_param_method` | method to initialize parameter estimates. Choose between "random" (randomly sample) or "known_regions" (uses unmethyalted and methylated regions that were identified based on Reinus et al. (2012) cell sorted data.). Defaults to "random".
`celltype_specific_dmrs` | cell type specific differentially methylated regions (DMRs).

### Value

A list of object to be used in estimatecc

[Package methylCC version 1.6.0 Index]