plot_density {methrix} | R Documentation

## Density Plot of β-Values

### Description

Density Plot of β-Values

### Usage

    plot_density(
      m,
      ranges = NULL,
      n_cpgs = 25000,
      pheno = NULL,
      col_palette = "RdYlGn"
    )

### Arguments

`m` | Input `methrix` object
`ranges` | genomic regions to be summarized. Could be a data.table with 3 columns (chr, start, end) or a `GenomicRanges` object
`n_cpgs` | Use these many random CpGs for plotting. Default 25000. Set it to `NULL` to use all - which can be memory expensive.
`pheno` | Column name of colData(m). Will be used as a factor to color different groups in the violin plot.
`col_palette` | Name of the RColorBrewer palette to use for plotting.

### Value

ggplot2 object

### Examples

    data('methrix_data')
    plot_density(m = methrix_data)

[Package methrix version 1.6.0 Index]