add_sequence {memes} | R Documentation

## Add nucleic acid sequence of regions to metadata column

### Description

Add nucleic acid sequence of regions to metadata column

### Usage

    add_sequence(ranges, genome, name = "sequence")

### Arguments

`ranges` | GRanges object
`genome` | BSgenome object or any other valid input to 'Biostrings::getSeq()' (Do 'showMethods(Biostrings::getSeq)' to show valid types)
`name` | name of metadata column to hold sequence information (default: "sequence"). Note, this will overwrite existing columns without warning if the name already exists.

### Value

'ranges' with new metadata column named "sequence" (or another value passed to 'name') holding the DNA or RNA sequence from 'genome'

### Examples

    data(example_peaks, package = "memes")
    dm.genome <- BSgenome.Dmelanogaster.UCSC.dm3::BSgenome.Dmelanogaster.UCSC.dm3
    add_sequence(example_peaks, dm.genome)

[Package memes version 1.0.4 Index]