importAme {memes} | R Documentation

## Parse AME output

### Description

This imports AME results using the "ame.tsv" output, and optionally the "sequences.tsv" output if run with "method = fisher". AME results differ based on the method used, thus this must be set on import or the column names will be incorrect.

### Usage

    importAme(path, method = "fisher", sequences = FALSE)

### Arguments

`path` | path to ame results file ("ame.tsv")
`method` | ame run method used (one of: c("fisher", "ranksum", "dmhg3", "dmhg4", "pearson", "spearman")). Default: "fisher".
`sequences` | FALSE or path to sequences file (only valid for method = "fisher")

### Value

data.frame with method-specific results. See [AME results](http://meme-suite.org/doc/ame-output-format.html) webpage for more information. If sequences is set to a path to the sequences.tsv and method = "fisher", the list-column 'sequences' will be appended to resulting data.frame.

### See Also

[runAme()]

### Examples

    ame_tsv <- system.file("extdata", "ame.tsv", package = "memes", mustWork = TRUE)
    importAme(ame_tsv)

[Package memes version 1.0.4 Index]