get_GS_network {martini} | R Documentation

## Get genomic sequence network

### Description

Creates a network of SNPs where each SNP is connected to its adjacent SNPs in the genome sequence. Corresponds to the genomic sequence (GS) network described by Azencott et al.

### Usage

    get_GS_network(gwas)

### Arguments

`gwas` | A SnpMatrix object with the GWAS information.

### Value

An igraph network of the GS network of the SNPs.

### References

Azencott, C. A., Grimm, D., Sugiyama, M., Kawahara, Y., & Borgwardt, K. M. (2013). Efficient network-guided multi-locus association mapping with graph cuts. Bioinformatics, 29(13), 171-179. https://doi.org/10.1093/bioinformatics/btt238

### Examples

    get_GS_network(minigwas)

[Package martini version 1.12.0 Index]