mCSEA-package {mCSEA} | R Documentation

## Methylated CpGs Set Enrichment Analysis

### Description

Identification of diferentially methylated regions (DMRs) in predefined regions (promoters, CpG islands...) from the human genome using Illumina's 450K or EPIC microarray data. Provides methods to rank CpG probes based on linear models and includes plotting functions.

### Author(s)

Jordi Martorell Marugán

Maintainer: Jordi Martorell Marugán<jordi.martorell@genyo.es>

### Examples

    ## Not run:
    library(mCSEA)
    data(mcseadata)
    myRank <- rankProbes(betaTest, phenoTest, refGroup = "Control")
    myResults <- mCSEATest(myRank, regionsTypes = "promoters", platform = "EPIC")

    ## End(Not run)
    data(precomputedmCSEA)
    head(myResults$promoters)

[Package mCSEA version 1.12.0 Index]