report {mAPKL} | R Documentation

## Produce an HTML report of the mAP-KL analysis

### Description

This function gathers the results of several analysis sessions ( feature selection, classification, annotation and network) and produces a report in HTML format.

### Usage

        report(mAPKLObj, ClassifyObj, AnnotObj=NULL, netObj=NULL, file)

### Arguments

`mAPKLObj` | An object of mAPKL class.
`ClassifyObj` | An object of mAPKL class.
`AnnotObj` | An object of Annot class.
`netObj` | An object of NetAttr class.
`file` | The full path and the name of the produced report

### Details

It presents the data samples with their phenotype labels, the exemplars with their statistical scores( adj.p-value, p-value and fc), and network characteristics (like weighted local degree,closeness,betweenness, transitivity) if such a network analysis has been performed. In addition, the report presents the classification performance achieved by those exemplars (either cross-validation or hold-out), and finally several annoation information (symbol, entrez id, ensemble id, and their chromosomal location) if an annotation analysis has been carried out.

### Value

Upon successful completion an HTML report is saved in the working directory.

### Author(s)

Argiris Sakellariou

### Examples

    ## When a network attributes object is present
    ## Not run: report(out,class.pred,class.metrics,netObj=net.attr,
    "C:/.../.../mAPKLreport.html")#Define a local path to store your report
    ## End(Not run)

    ## When an annotation object is present
    ## Not run: report(out,class.pred,class.metrics,gene.info,
    "C:/.../.../mAPKLreport.html")#Define a local path to store your report
    ## End(Not run)

    ## Without annotation and network attributes objects
    ## Not run: report(out,class.pred,class.metrics,
    file="C:/.../.../mAPKLreport.html")#Define a local path to store your report
    ## End(Not run)

[Package mAPKL version 1.22.0 Index]