estimateIntensity {lumi} | R Documentation

## Estimate intensity of Illumina methylation data

### Description

Estimate intensity of Illumina methylation data, which is the sum of Illumina methylated and unmethylated probe intensities

### Usage

    estimateIntensity(methyLumiM, returnType=c("ExpressionSet", "matrix"))

### Arguments

`methyLumiM` | MethyLumiM-class object or eSet-class object, which include methylated and unmethylated probe intensities
`returnType` | determine whether return an ExpressionSet or matrix object

### Details

The Intensity basically is the sum of Illumina methylated and unmethylated probe intensities.

### Value

An ExpressionSet or matrix object of methylation Intensity-value

### Author(s)

Pan DU

### See Also

See Also as `estimateBeta` and `estimateM`

### Examples

    data(example.lumiMethy)
    methyLumiIntensity = estimateIntensity(example.lumiMethy)
    boxplot(methyLumiIntensity)

[Package lumi version 2.44.0 Index]