removeTracksByName,igvR-method {igvR} | R Documentation

## Remove named tracks

### Description

Remove named tracks

### Usage

    ## S4 method for signature 'igvR'
    removeTracksByName(obj, trackNames)

### Arguments

`obj` | An object of class igvR
`trackNames` | a character vector

### Value

A character vector

### See Also

getTrackNames

### Examples

    if(interactive()){
       igv <- igvR()
       setGenome(igv, "hg19")
       showGenomicRegion(igv, "MEF2C")
         # create three arbitrary tracks
       base.loc <- 88883100
       tbl <- data.frame(chrom=rep("chr5", 3),
                         start=c(base.loc, base.loc+100, base.loc + 250),
                         end=c(base.loc + 50, base.loc+120, base.loc+290),
                         name=c("a", "b", "c"),
                         score=runif(3),
                         strand=rep("*", 3),
                         stringsAsFactors=FALSE)
       track.1 <- DataFrameAnnotationTrack("track.1", tbl, color="red", displayMode="SQUISHED")
       track.2 <- DataFrameAnnotationTrack("track.2", tbl, color="blue", displayMode="SQUISHED")
       track.3 <- DataFrameAnnotationTrack("track.3", tbl, color="green", displayMode="SQUISHED")
       displayTrack(igv, track.1)
       displayTrack(igv, track.2)
       displayTrack(igv, track.3)
       removeTracksByName(igv, "track.2")
         #----------------------------------------
         # bulk removal of the remaining tracks,
         # but leave the h19 reference track
         #----------------------------------------
       removeTracksByName(igv, getTrackNames(igv)[-1])
       }

[Package igvR version 1.12.0 Index]